PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc054761.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

LBD

Protein Properties

Length: 146aa MW: 16603.8 Da PI: 8.3934

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc054761.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	108.3	6.1e-34	24	123	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqql 87 aCaaC r+kCa+dC lapyfp+++ ++f+nv+klFG+s ++k++k+ +++e ++da++s++ eA+a ardPv G+ +++ +l qq+ Cse_sc054761.1_g010.1 24 ACAACHSRRKKCAPDCNLAPYFPHDRLQQFQNVRKLFGVSFITKTIKDHNDQEeKDDAVTSIINEADAHARDPVGGCSRILIELDQQI 111 7********************************************99655559***************************** PP DUF260 88 eqlkaelallke 99 +++++el+ +k+ Cse_sc054761.1_g010.1 112 REAESELDIVKQ 123 *****99886 PP

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence
MSTQNNHPNN NQLPQPRRKP SNPACAACHS RRKKCAPDCN LAPYFPHDRL QQFQNVRKLF 60 GVSFITKTIK DHNDQEEKDD AVTSIINEAD AHARDPVGGC SRILIELDQQ IREAESELDI 120 VKQLVALCKR IGLQKLHQII NDQMGR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	17	34	RRKPSNPACAACHSRRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	3e-33	LBD family protein