PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc055763.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

C2H2

Protein Properties

Length: 446aa MW: 49584.9 Da PI: 8.3788

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc055763.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.9	1.8e-05	46	68	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Cse_sc055763.1_g010.1 46 FVCEICSKGFQRDQNLQLHRRGH 68 89*******************88 PP
2	zf-C2H2	12.1	0.00061	123	145	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H + + Cse_sc055763.1_g010.1 123 WKCEKCSKKYAVQSDWKAHSKIC 145 58*****************9876 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MDVTNTNPNP NPSNSVKRRR SLAGNPDPDA EVIALSPTSL MATNRFVCEI CSKGFQRDQN 60 LQLHRRGHNL PWKLKQRNKN EIVRKKVYIC PEVSCVHHDA SRALGDLTGV KKHFSRKHGE 120 KKWKCEKCSK KYAVQSDWKA HSKICGTKEY KCDCGTIFSR KDSFITHRAF CDALSQDNSR 180 MGLFPVIQTT ANLNFNSHMM MMNNGGRIMN PRFPGMFGGC GGLEMNGLDG NGIKPRLPIW 240 LHQHTDNPLE NSTTNSSLLG STSSNNNNSE ILSPEMVQWL NRSHQTVENY TDMPQGLHLK 300 EEVDNSEWRF QENISQWSTL PAGLPATTKS VGRPNPQMSA TALLQKASQM GTTRSTNSSG 360 YGLMSTSELS GLTSLNQTGS NSVSEAENLS GGMMNGDGLM MMMMMEGLKQ NTCGIDSNDG 420 NLTRDFLGVE DNEQQELIKF TCSMNN

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MDVTNTNPNP NPSNSVKRRR SLAGNPDPDA EVIALSPTSL MATNRFVCEI CSKGFQRDQN  60
LQLHRRGHNL PWKLKQRNKN EIVRKKVYIC PEVSCVHHDA SRALGDLTGV KKHFSRKHGE  120
KKWKCEKCSK KYAVQSDWKA HSKICGTKEY KCDCGTIFSR KDSFITHRAF CDALSQDNSR  180
MGLFPVIQTT ANLNFNSHMM MMNNGGRIMN PRFPGMFGGC GGLEMNGLDG NGIKPRLPIW  240
LHQHTDNPLE NSTTNSSLLG STSSNNNNSE ILSPEMVQWL NRSHQTVENY TDMPQGLHLK  300
EEVDNSEWRF QENISQWSTL PAGLPATTKS VGRPNPQMSA TALLQKASQM GTTRSTNSSG  360
YGLMSTSELS GLTSLNQTGS NSVSEAENLS GGMMNGDGLM MMMMMEGLKQ NTCGIDSNDG  420
NLTRDFLGVE DNEQQELIKF TCSMNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	86	KLKQRNKNEIVRKK
2	75	88	KLKQRNKNEIVRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	6e-96	C2H2 family protein