PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc057861.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 278aa    MW: 31325.2 Da    PI: 10.452
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc057861.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF542.1e-171150342
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Cse_sc057861.1_g010.1 11 ITNDSARKATFKKRKKGLMKKVNELSTLCGIDACAIIYSP 50
                           89*************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    
MTRKKVKLAL ITNDSARKAT FKKRKKGLMK KVNELSTLCG IDACAIIYSP YEAQPEVWPS  60
NIGVQRVLTQ FKRMPEMEQS KKMVNQESFI RQRITKANEQ LKKQIKENRE KEMIEVMYQC  120
LTGKGSITNL ILPDLNDLGG LVDQTLKDIN RRIESLKKTV PGKAVAAPPP PSLPSRPQAT  180
VGANNLSSNN DMIRDGAKGV PAGARAPHGF FRYRLVMHGL EKRHVVHSSS AMDGMQRTQW  240
FTDWMTNPSD HNLGLGPGYE LTPFVDNGNQ IWPHPYFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325RKKVKLALITNDSARKATFKKRK
22226KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-66M-type_MADS family protein