PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc060082.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 219aa    MW: 24738.2 Da    PI: 5.1758
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc060082.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF31.42.4e-10544342
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                           ie +  r+ t+ kR++g++ K   + +LC++e++ ii ++
  Cse_sc060082.1_g010.1  5 IEKDAARKATYNKRKKGLMTKLDQITTLCGVEACAIINGP 44
                           899999*******************************886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    
MSIYIEKDAA RKATYNKRKK GLMTKLDQIT TLCGVEACAI INGPYKPGFE VWPNDEGVLS  60
VLNKFSSMSE MDRSKHKENK PRYLENRIKK LEEQIKKQMM LNRGLETDNL MSDCLSGKVS  120
VADDLNIPNK QAISSLADQN LLEIDERLEL LIKNGTPADA PLPPPPPPQL PNDVECYVPV  180
MENQGASTES ETSWYPTDWL GNYNWNLMKW DRASSSKTA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65330.12e-29M-type_MADS family protein