PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc067263.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family LBD
Protein Properties Length: 195aa    MW: 21743.6 Da    PI: 8.3573
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc067263.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601391.7e-4323121199
                 DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                            +CaaCk+lrrkC ++Cv+apyfp e+p+kf nvhk+FGasnv+kl++++ +++red++ssl+yeAear+rdPv+G+vg+i+ lq++++
  Cse_sc067263.1_g010.1  23 PCAACKFLRRKCIPGCVFAPYFPPEDPQKFMNVHKIFGASNVTKLMNEVMPHQREDVVSSLAYEAEARIRDPVHGCVGIISYLQREVD 110
                            7*************************************************************************************** PP

                 DUF260  89 qlkaelallke 99 
                            +l+++l+++++
  Cse_sc067263.1_g010.1 111 RLQKDLDATNA 121
                            ******99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MDINVTKQVQ VNKMASSTSY NYPCAACKFL RRKCIPGCVF APYFPPEDPQ KFMNVHKIFG  60
ASNVTKLMNE VMPHQREDVV SSLAYEAEAR IRDPVHGCVG IISYLQREVD RLQKDLDATN  120
ADLLRYSSNG MAGLPCMTSI DQPVTRQSAV DPFATRRIGG GYYQPPASYY GNQMWNLQNH  180
HSNFHGNNMS GGGGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63090.22e-68LBD family protein