PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cse_sc085024.1_g010.1
Organism
Chrysanthemum seticuspe
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum
Family M-type_MADS
Protein Properties Length: 204aa    MW: 22540.7 Da    PI: 7.8043
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cse_sc085024.1_g010.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF60.52e-191661348
                           --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
                 SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                            e +sn qvtfskRr g++KK +ELS+LC+ae+a+++fs+  k + 
  Cse_sc085024.1_g010.1 16 MEKESNLQVTFSKRRSGMFKKDSELSILCGAEIAIVVFSPAKKAFS 61
                           68899**********************************9988665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MARHSKGRQK IKMQKMEKES NLQVTFSKRR SGMFKKDSEL SILCGAEIAI VVFSPAKKAF  60
SFGHPSVETI TDQIAIVVFS PAKKAFSFGH PSVETITDRY LRENIPSSSN TSLLMEAHRN  120
AQIHELNRQL TYGQDNHWWE APIESLGLEE LEQLKVQLGV IGSNIEEQKD RSVAEAANAM  180
AVVPISSSTG IDSGYGLSIT PHGL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-38M-type_MADS family protein