PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cse_sc198799.1_g010.1

Organism

Chrysanthemum seticuspe

Taxonomic ID

1111766

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Asteroideae; Anthemideae; Artemisiinae; Chrysanthemum

Family

FAR1

Protein Properties

Length: 198aa MW: 22739.8 Da PI: 10.346

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cse_sc198799.1_g010.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	69.5	8e-22	59	168	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....................tekerrtraetrtgCkaklkv 68 kfY+eYA+e GF+vr+ ++++k+++ + f+Cs+eg + + k++ ++ +rr+ra++r+gCka l++ Cse_sc198799.1_g010.1 59 KFYKEYAREGGFEVRRGGQSNRKKKQDPDLKYFCCSREGVKPSPKDDiskkdksktdtpssdiaevvKVIKRRKRASQRCGCKALLRL 146 6**************9999999999*********9999988999***********99999************** PP FAR1 69 kkekdgkwevtkleleHnHela 90 +++ ++k++v+++ ++HnH+l+ Cse_sc198799.1_g010.1 147 RQTPENKFVVYTFFEKHNHSLV 168 ******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
EPSTPRSTNT VQDNVVDAES VTQVGSYQPT PPGSKFWIPE AKNKPVEGTQ FDTIEQALKF 60 YKEYAREGGF EVRRGGQSNR KKKQDPDLKY FCCSREGVKP SPKDDISKKD KSKTDTPSSD 120 IAEVVKVIKR RKRASQRCGC KALLRLRQTP ENKFVVYTFF EKHNHSLVHE NDYKYLRAAR 180 KLTFSKQHLL RKLSNANI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	80	111	RKKKQDPDLKYFCCSREGVKPSPKDDISKKDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.1	1e-09	FAR1 family protein