PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz01g15230.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

MYB_related

Protein Properties

Length: 710aa MW: 76107.9 Da PI: 5.4683

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz01g15230.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.5	3e-08	129	171	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+ eE+++ +a ++G + Wk+ a ++g +R + s+ qk+ Cz01g15230.t1 129 PWSDEEELKYTEALDLHGRD-WKKCADHIG-TRDCRAVASHAQKH 171 8***************77.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 710 aa Download sequence
MADEATDAMI AQALWAAENT YYDYGVFGGG SSDDSDYGGK RKKKQQAKKA RTSRASKKTS 60 EPSEAVSEPA VRSDAANAVA EVPAPNQQSA EPNTGADEDQ EQDDVAGDTS ATGRRKRKDL 120 GQKRERGRPW SDEEELKYTE ALDLHGRDWK KCADHIGTRD CRAVASHAQK HFIKLCLTGQ 180 PLPPKVAETG IGYTLSGKLL DPNSAAGKAY GFKPELILKL EGSALETALA GLVREDMPPV 240 DQSALDAATT RDQDQQARKS AAKPPAKRRK KQEDSAEPAK PPSPPKPQPA ATAEVLIHLP 300 PIAPEYNAAP VQTEYARNRP RRETAGQRLT LGTTTESLEL VKCSEFVGPP GSGAPLSQPF 360 AVDVATEVMI AMEFHAHLSS CEIIGLLGGC WDPERRCLSM SEAYPCARAA GSDARTSVEL 420 DAGAEVEARA LMEAKGQRCV GWYHSHPVFE PSPSLKDMEN QRNYQALFRD DSSNMEPFVG 480 VILGPYDLAM PQPLTAITFF VVQQKGKLLQ PFNIRCGLRD TSNLPSTQCQ AKLDLLLDMF 540 REDIGRIDFT ESWRPFTSLN ADGAVSGSSC SKLQKLLTAL RYHLTRADKA GVEDFLHQLC 600 VKLQERWQLA LGLSSTAVTA TEQTNPATLG HGVSGEPHSG TAATSAAPHS NTPAGMTSDD 660 NTGAKAEQLQ PTDSTQPPAC GAVTDCNGRS PAPSNQGGTD ADTAATDGQ*

Sequence ? help Back to Top

Protein Sequence Length: 710 aa Download sequence

MADEATDAMI AQALWAAENT YYDYGVFGGG SSDDSDYGGK RKKKQQAKKA RTSRASKKTS  60
EPSEAVSEPA VRSDAANAVA EVPAPNQQSA EPNTGADEDQ EQDDVAGDTS ATGRRKRKDL  120
GQKRERGRPW SDEEELKYTE ALDLHGRDWK KCADHIGTRD CRAVASHAQK HFIKLCLTGQ  180
PLPPKVAETG IGYTLSGKLL DPNSAAGKAY GFKPELILKL EGSALETALA GLVREDMPPV  240
DQSALDAATT RDQDQQARKS AAKPPAKRRK KQEDSAEPAK PPSPPKPQPA ATAEVLIHLP  300
PIAPEYNAAP VQTEYARNRP RRETAGQRLT LGTTTESLEL VKCSEFVGPP GSGAPLSQPF  360
AVDVATEVMI AMEFHAHLSS CEIIGLLGGC WDPERRCLSM SEAYPCARAA GSDARTSVEL  420
DAGAEVEARA LMEAKGQRCV GWYHSHPVFE PSPSLKDMEN QRNYQALFRD DSSNMEPFVG  480
VILGPYDLAM PQPLTAITFF VVQQKGKLLQ PFNIRCGLRD TSNLPSTQCQ AKLDLLLDMF  540
REDIGRIDFT ESWRPFTSLN ADGAVSGSSC SKLQKLLTAL RYHLTRADKA GVEDFLHQLC  600
VKLQERWQLA LGLSSTAVTA TEQTNPATLG HGVSGEPHSG TAATSAAPHS NTPAGMTSDD  660
NTGAKAEQLQ PTDSTQPPAC GAVTDCNGRS PAPSNQGGTD ADTAATDGQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	39	45	GKRKKKQ
2	114	119	RRKRKD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	3e-11	MYB_related family protein