PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz02g00230.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

MYB

Protein Properties

Length: 841aa MW: 88297.8 Da PI: 6.0165

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz02g00230.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	41.8	2.4e-13	10	65	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g+W +eEd+ l++av+ +G ++W+ +ar+++ gRt+kqc+ r++ +l Cz02g00230.t1 10 KGAWRQEEDDALKQAVAVHGIKNWTNVARCFNdlmgrepnVGRTAKQCRGRYLHHL 65 79**************************************************9775 PP
2	Myb_DNA-binding	48.6	1.8e-15	72	113	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+WT eE+e+ ++++k +G++ W++Ia++++ gRt+ +k++w+ Cz02g00230.t1 72 GAWTVEEEEKMIQGHKCYGNH-WSKIAHMLP-GRTETAIKNHWN 113 89*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 841 aa Download sequence
MSSMDAVEIK GAWRQEEDDA LKQAVAVHGI KNWTNVARCF NDLMGREPNV GRTAKQCRGR 60 YLHHLKPDLK TGAWTVEEEE KMIQGHKCYG NHWSKIAHML PGRTETAIKN HWNCTLRRKV 120 GADERRRTVL QNYILSLGLQ QDAQQRAIAA AAPDTACLAG MLGFPANMLA FALQSQPMAH 180 LASHANFTPS PPRTRGNINP KRSESEATAE SAATTGTTAT LAEAVAAGSS QDLLRRCALF 240 YLELAMQQAK QNGHEQGKLQ ELGSSSGDPT LDAVHLQVGF KRAASGSTAK HPPGRHGNTT 300 KRSRMHQESR AGGGGSRARH RASALRALTA VAAAQGACDD GFDDDKQDMG AAWEHGDRQR 360 LDRMECEPYD LVDPETDTAA VLQAQQSYPG EVPGSIAPVT PPLASDAVQA AMQTLLAAAA 420 TAADRLKAEK SRPADADAAD SQIPAGGKLL GSQGGSVAHN TPDSSPKATG HGDESQTGLP 480 PCSAIETLAS VAVNQSKPTA PATKVGSKRV VAVDADPTGH PDEPDDVFDA EDIQHSCREL 540 VQQICHGALT GTRHGGRALL NPSGGQHLTH HATGYEENQQ GVWCLPAVSS IRHRQLNHKG 600 AGARWVGAAM SHHEVNDHVA DDDGDNDDDD DDDDNPQGYD DDDVDDGEEE DADDPQHGPA 660 SDVQANGAIG GVAVMQQENL VGQQGAGGKS PDGHVLGVHL GTPQPQKGND HHFGDDALLV 720 QGALPAACMS VSHMGMMPVL RCSSKHANGL VASEVQAGCH NHSGPAVGGC NGGLAGVNMD 780 LVHLSQQLTA AVESAVASAA SSLVNSNGDS KLQLVVLPII LNAALPRPTV CPAISTAKSI 840 *

Sequence ? help Back to Top

Protein Sequence Length: 841 aa Download sequence

MSSMDAVEIK GAWRQEEDDA LKQAVAVHGI KNWTNVARCF NDLMGREPNV GRTAKQCRGR  60
YLHHLKPDLK TGAWTVEEEE KMIQGHKCYG NHWSKIAHML PGRTETAIKN HWNCTLRRKV  120
GADERRRTVL QNYILSLGLQ QDAQQRAIAA AAPDTACLAG MLGFPANMLA FALQSQPMAH  180
LASHANFTPS PPRTRGNINP KRSESEATAE SAATTGTTAT LAEAVAAGSS QDLLRRCALF  240
YLELAMQQAK QNGHEQGKLQ ELGSSSGDPT LDAVHLQVGF KRAASGSTAK HPPGRHGNTT  300
KRSRMHQESR AGGGGSRARH RASALRALTA VAAAQGACDD GFDDDKQDMG AAWEHGDRQR  360
LDRMECEPYD LVDPETDTAA VLQAQQSYPG EVPGSIAPVT PPLASDAVQA AMQTLLAAAA  420
TAADRLKAEK SRPADADAAD SQIPAGGKLL GSQGGSVAHN TPDSSPKATG HGDESQTGLP  480
PCSAIETLAS VAVNQSKPTA PATKVGSKRV VAVDADPTGH PDEPDDVFDA EDIQHSCREL  540
VQQICHGALT GTRHGGRALL NPSGGQHLTH HATGYEENQQ GVWCLPAVSS IRHRQLNHKG  600
AGARWVGAAM SHHEVNDHVA DDDGDNDDDD DDDDNPQGYD DDDVDDGEEE DADDPQHGPA  660
SDVQANGAIG GVAVMQQENL VGQQGAGGKS PDGHVLGVHL GTPQPQKGND HHFGDDALLV  720
QGALPAACMS VSHMGMMPVL RCSSKHANGL VASEVQAGCH NHSGPAVGGC NGGLAGVNMD  780
LVHLSQQLTA AVESAVASAA SSLVNSNGDS KLQLVVLPII LNAALPRPTV CPAISTAKSI  840
*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	117	127	RRKVGADERRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27785.1	2e-29	MYB family protein