PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz04g06060.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

CO-like

Protein Properties

Length: 373aa MW: 40665.2 Da PI: 6.4973

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz04g06060.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19.7	1.8e-06	2	44	4	41
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 +C ++ + +C+++q +lC+ C +++H++ H +v+ Cz04g06060.t1 2 ATCVVCQAA-AFVYCHNDQAFLCAGCDSSIHSSnalaarHCRVK 44 5899988.*******************7788888888776 PP
2	zf-B_box	29	2.2e-09	43	87	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 ++C+++++k+ + fC+++q +lC+ C +H + H++vp Cz04g06060.t1 43 VKVCELCHKKQSTVFCKNDQAFLCDYCDADIHLNnplgarHELVP 87 579*****************************7779999999998 PP
3	CCT	67.1	4.8e-23	302	346	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 R+++++RY+eKrk+RkFeK+irY+sRKa+Ae RpR+KGrF+k++e Cz04g06060.t1 302 RAERVMRYREKRKNRKFEKTIRYASRKAYAEVRPRIKGRFAKREE 346 99****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MATCVVCQAA AFVYCHNDQA FLCAGCDSSI HSSNALAARH CRVKVCELCH KKQSTVFCKN 60 DQAFLCDYCD ADIHLNNPLG ARHELVPAIQ AVQEMGCCGI SVEAKGENLT SALCESVCHS 120 ETSHSVSATP SLTGSARPTE TAQMAPLSNV VPPAVDLPQN KVLDKDTLAK SIWGKDFEAF 180 ELDSSWLDRL DMGFDFTDIL TDAPADGLVP TLSGNSSEHA DLLVVPSMSD DFQVPSLPNH 240 QDPVVTLDKL TPMMPTPAVN PQTYPQQTAV VLTARPADSA ATYSMSEASY MSNHSNSDNL 300 TRAERVMRYR EKRKNRKFEK TIRYASRKAY AEVRPRIKGR FAKREEVLAF KAAEAAMKMG 360 RGGHNDMVVP VM*

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MATCVVCQAA AFVYCHNDQA FLCAGCDSSI HSSNALAARH CRVKVCELCH KKQSTVFCKN  60
DQAFLCDYCD ADIHLNNPLG ARHELVPAIQ AVQEMGCCGI SVEAKGENLT SALCESVCHS  120
ETSHSVSATP SLTGSARPTE TAQMAPLSNV VPPAVDLPQN KVLDKDTLAK SIWGKDFEAF  180
ELDSSWLDRL DMGFDFTDIL TDAPADGLVP TLSGNSSEHA DLLVVPSMSD DFQVPSLPNH  240
QDPVVTLDKL TPMMPTPAVN PQTYPQQTAV VLTARPADSA ATYSMSEASY MSNHSNSDNL  300
TRAERVMRYR EKRKNRKFEK TIRYASRKAY AEVRPRIKGR FAKREEVLAF KAAEAAMKMG  360
RGGHNDMVVP VM*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15840.1	2e-44	CO-like family protein