PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz04g14210.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 807aa MW: 86422.8 Da PI: 6.8974

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz04g14210.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.7	7.2e-07	604	626	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C+f++ G C G+ C+F+H+ Cz04g14210.t1 604 RPACKFWHV-GRCTKGSACPFSHS 626 799****.***********7 PP
2	zf-CCCH	21	5.7e-07	635	655	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +Crffa+ G C G+ C+F+H Cz04g14210.t1 635 PCRFFAA-GKCTAGADCRFSHE 655 79999.***********5 PP

Sequence ? help Back to Top
Protein Sequence Length: 807 aa Download sequence
MMSEMPDPDM LQPVCRLLPH PLPPPPPAAV QLLDHLLQSY QDWLIGGQRP GSHAECGQYE 60 AWLHAQASGS QPTNQGHQEL PSSGTLAQPI NQQPLERSCL LGEDVLNSAA AVSNQQRPST 120 ATLTAAPAAK QPQPKHTRPL SQAENLSNRI KRARQNPTKG SVSDASHSSI SRSATAAAAA 180 AAAPPTTAQQ TRIQQLETPP QHHHCQQQQQ HIQQQQQHIQ QQRPPSHGVA AAPGATAVAW 240 PIAGATPELH THDIARQAGI SAGLSTTTGE PAGSIADCKR QSPPTQNLAV SGEGAVPVAV 300 AAAAAPASLL PPSHFRRRQR NKHHDQDMST PEPETADAIK FMDSWQQLVA EAFRDDNTET 360 DGEADHHAAL AAEQASAARS LAARLGLMLQ RSCESAPSTQ QQQQQVPVYA ATSAPPAPTI 420 SAHATGAVAS NQIQPPLAPG MHNPPADELE EGEIISDDGD DDRSDSQGQQ QAASASSGAQ 480 HASLVPGATA QASQPIPGKR RNRAGQKTRQ KRQRARIRDA VAAGLGTGVT AGDSSQPSPA 540 GRGVEVGLYA EIKHWEKQQR QLKRKKRFSR AAQAQALTTP IACCCQGRCQ PTREAKVEFN 600 VTERPACKFW HVGRCTKGSA CPFSHSGQPL INLIPCRFFA AGKCTAGADC RFSHEPSNEP 660 CRIMIMTGRC PIGAACRYSH APLDPEDIEA LKGIIMEQQE QQQQPSHIAW PHAVADNAGA 720 AQQQQQQQQQ EQEQQQQLSA TQFDTLMHRP STQQYGVKSW PSDQTPGSVW QQDTCNTHAV 780 LSHDAAGTQR DACEQDSEGS LEIEEF*

Sequence ? help Back to Top

Protein Sequence Length: 807 aa Download sequence

MMSEMPDPDM LQPVCRLLPH PLPPPPPAAV QLLDHLLQSY QDWLIGGQRP GSHAECGQYE  60
AWLHAQASGS QPTNQGHQEL PSSGTLAQPI NQQPLERSCL LGEDVLNSAA AVSNQQRPST  120
ATLTAAPAAK QPQPKHTRPL SQAENLSNRI KRARQNPTKG SVSDASHSSI SRSATAAAAA  180
AAAPPTTAQQ TRIQQLETPP QHHHCQQQQQ HIQQQQQHIQ QQRPPSHGVA AAPGATAVAW  240
PIAGATPELH THDIARQAGI SAGLSTTTGE PAGSIADCKR QSPPTQNLAV SGEGAVPVAV  300
AAAAAPASLL PPSHFRRRQR NKHHDQDMST PEPETADAIK FMDSWQQLVA EAFRDDNTET  360
DGEADHHAAL AAEQASAARS LAARLGLMLQ RSCESAPSTQ QQQQQVPVYA ATSAPPAPTI  420
SAHATGAVAS NQIQPPLAPG MHNPPADELE EGEIISDDGD DDRSDSQGQQ QAASASSGAQ  480
HASLVPGATA QASQPIPGKR RNRAGQKTRQ KRQRARIRDA VAAGLGTGVT AGDSSQPSPA  540
GRGVEVGLYA EIKHWEKQQR QLKRKKRFSR AAQAQALTTP IACCCQGRCQ PTREAKVEFN  600
VTERPACKFW HVGRCTKGSA CPFSHSGQPL INLIPCRFFA AGKCTAGADC RFSHEPSNEP  660
CRIMIMTGRC PIGAACRYSH APLDPEDIEA LKGIIMEQQE QQQQPSHIAW PHAVADNAGA  720
AQQQQQQQQQ EQEQQQQLSA TQFDTLMHRP STQQYGVKSW PSDQTPGSVW QQDTCNTHAV  780
LSHDAAGTQR DACEQDSEGS LEIEEF*