PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz05g00060.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 408aa MW: 42290.8 Da PI: 8.3831

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz05g00060.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.5e-12	94	119	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+ C+ f++ G C+yGd+Ck+aHg+ Cz05g00060.t1 94 YKTRMCNKFME-GKCPYGDTCKYAHGE 119 9********.***********96 PP
2	zf-CCCH	45	1.8e-14	182	208	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC +f+ tG C+yG+rC+FaHg+ Cz05g00060.t1 182 KKTRLCERFMNTGDCPYGARCTFAHGQ 208 59***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 408 aa Download sequence
MQPMMPNMGM NPQAGGMFPN PGMMFNSMPG GMPTGMEGMG MYGDMQGMQG MQGMPGMGGM 60 GMPGMGMPGM QMPGMGGMPQ AGGGLQDKQG SIFYKTRMCN KFMEGKCPYG DTCKYAHGEH 120 ELRQAPAHMA GGGGMGGAGM GGMGMAGAGA GAVGAHGGQG KIMTPNNPPL TADQTRMREM 180 MKKTRLCERF MNTGDCPYGA RCTFAHGQEE LRQAPAFGGP KPGGVAGSVA PAATTSFKPG 240 AGVMPVVRNP AADNGMGVKR TADAVGFGDV KRVRVVGPPI VPPAQEKLPD SGSLGLDAIK 300 AKFDDLKQEV ARFAAETGHS VAVFTIGGIL SDLPDSGQED FDEDVYLKST STTTYPRLKL 360 SVLKYGTGGV AKQLTCRAEI VKFVCARGTK ALSEMAQQDA ITFGNEF*

Sequence ? help Back to Top

Protein Sequence Length: 408 aa Download sequence

MQPMMPNMGM NPQAGGMFPN PGMMFNSMPG GMPTGMEGMG MYGDMQGMQG MQGMPGMGGM  60
GMPGMGMPGM QMPGMGGMPQ AGGGLQDKQG SIFYKTRMCN KFMEGKCPYG DTCKYAHGEH  120
ELRQAPAHMA GGGGMGGAGM GGMGMAGAGA GAVGAHGGQG KIMTPNNPPL TADQTRMREM  180
MKKTRLCERF MNTGDCPYGA RCTFAHGQEE LRQAPAFGGP KPGGVAGSVA PAATTSFKPG  240
AGVMPVVRNP AADNGMGVKR TADAVGFGDV KRVRVVGPPI VPPAQEKLPD SGSLGLDAIK  300
AKFDDLKQEV ARFAAETGHS VAVFTIGGIL SDLPDSGQED FDEDVYLKST STTTYPRLKL  360
SVLKYGTGGV AKQLTCRAEI VKFVCARGTK ALSEMAQQDA ITFGNEF*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	4e-11	C3H family protein