PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz05g13110.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 1308aa MW: 140648 Da PI: 7.4136

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz05g13110.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.5	3.6e-11	1227	1252	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + + C+f+++tG+CkyG+ C+F H+p Cz05g13110.t1 1227 DKATCDFYMKTGHCKYGEECCFDHPP 1252 5688********************96 PP
2	zf-CCCH	28.5	2.6e-09	1268	1293	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ C f++++ +CkyG+ CkF+H++ Cz05g13110.t1 1268 GETVCVFYLKNNQCKYGPACKFHHPK 1293 6789********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 1308 aa Download sequence
MGKRRASLCL AWLLAISAVF GEEPKLKSST GRQLVEYRQP GLAQEVLVVS LLDGHVVAVE 60 PETGRLLWTF DSGAPLVSSK QASVKSPSSP AFNVFPGADG GLYAYHGMRA LERLPISLPE 120 LVEAAPSMTA DGSMIVGRQE CKIFVLDKHT GRPVWTVSDS SADVADRAAV GLHLAGKQDS 180 LLYIGRQDFT VRSVRLDTQA EMWNATFARM YLLNPDNTRS VMDFLSGGRG SHLSGQQGLP 240 GMPRLVVGAD NSLQAYDSLS GYRKWSIAFG TPPIAAYTPF GYGSNFLAPQ NQPKALPGAR 300 RTQTRTTSNN KIKGNIAGGT TVLVGALHGS LYALPADHLT LEAGTDSEVV PLPLPTSQPL 360 ALEGKKDDSA SPHEQPSLSL SPSAGSLSVR DDAQLNSLVT LEETEPDVAD DLDSLVCPTP 420 KLGIHNVRVN GETGQVPWLP DKTATAQAVD VKDTGNGWSL SRQIMAVLVA LLLLPTLLWG 480 WRQYIANTAA VMNTSGTAQN KQAQQLDRQG VATKAKAKSK SRSKAKDRST TPPSGGSTAV 540 GARTWIEDLG VELVDGQVLR GAGQPQFDQQ AMYSDDVYQQ PGINGGYGPH SRSANGLGHA 600 HAGDDARYTG GQGGAGGADH QLMDRIPSRS YVDQNGAVVI GRLRVGPGVL GYGSAGTIVY 660 EGVLDGRPVA VKRLLRQFYD LAFKEIQVLI VSDEHPNVVR CFAMEEDREF VYLALERCKQ 720 TLSDWIGSKE GQAAMLDSSG CPTPLCMQIL SDIVEGLAAL HERSIVHRDL KPHNVLLTES 780 GRAKLSDMGL SKQLVAEQSS FESHGSGGSS GWQAPEQLIV KDGGNMRQTR AMDIFSLGCI 840 MYYCITGGGH PFGETYERDT NILKNHPNLK PLQKQAEALN LISAMLTKNP EARPNMTAVL 900 GHPLWWSVDQ RLQLLVDVSD RVENEDREPD QTLLSALERF TQVAVGHNWG AVMDAELIGN 960 LGIYRRYDYT CLRDLLRVIR NKRNHFREMP ESLQQLLGPI PDGYYRYFST RFPNLLLAVF 1020 FFALQNLSTD ANLRKYWSQG PEWCGPFWDI FQYHAGLRNK ATKTPGSKKQ QPAVDSNSKP 1080 TSSNGNSNSN GIVTAAGSKG HSAAAAAVAV IKASPANGVT HTNSSTTQLG STTHTSSNSA 1140 NGMAGAVISY SAVVAAAAAA TSPLPAKRPA NSSSGPSSGK AALAGTAVAP AEAVAKVPDE 1200 PSVPIVGYEQ DEGNEVLHTP MFPRRPDKAT CDFYMKTGHC KYGEECCFDH PPEYAVSRTE 1260 LQLPFRPGET VCVFYLKNNQ CKYGPACKFH HPKLLPIYAG SAVSPSP*

Sequence ? help Back to Top

Protein Sequence Length: 1308 aa Download sequence

MGKRRASLCL AWLLAISAVF GEEPKLKSST GRQLVEYRQP GLAQEVLVVS LLDGHVVAVE  60
PETGRLLWTF DSGAPLVSSK QASVKSPSSP AFNVFPGADG GLYAYHGMRA LERLPISLPE  120
LVEAAPSMTA DGSMIVGRQE CKIFVLDKHT GRPVWTVSDS SADVADRAAV GLHLAGKQDS  180
LLYIGRQDFT VRSVRLDTQA EMWNATFARM YLLNPDNTRS VMDFLSGGRG SHLSGQQGLP  240
GMPRLVVGAD NSLQAYDSLS GYRKWSIAFG TPPIAAYTPF GYGSNFLAPQ NQPKALPGAR  300
RTQTRTTSNN KIKGNIAGGT TVLVGALHGS LYALPADHLT LEAGTDSEVV PLPLPTSQPL  360
ALEGKKDDSA SPHEQPSLSL SPSAGSLSVR DDAQLNSLVT LEETEPDVAD DLDSLVCPTP  420
KLGIHNVRVN GETGQVPWLP DKTATAQAVD VKDTGNGWSL SRQIMAVLVA LLLLPTLLWG  480
WRQYIANTAA VMNTSGTAQN KQAQQLDRQG VATKAKAKSK SRSKAKDRST TPPSGGSTAV  540
GARTWIEDLG VELVDGQVLR GAGQPQFDQQ AMYSDDVYQQ PGINGGYGPH SRSANGLGHA  600
HAGDDARYTG GQGGAGGADH QLMDRIPSRS YVDQNGAVVI GRLRVGPGVL GYGSAGTIVY  660
EGVLDGRPVA VKRLLRQFYD LAFKEIQVLI VSDEHPNVVR CFAMEEDREF VYLALERCKQ  720
TLSDWIGSKE GQAAMLDSSG CPTPLCMQIL SDIVEGLAAL HERSIVHRDL KPHNVLLTES  780
GRAKLSDMGL SKQLVAEQSS FESHGSGGSS GWQAPEQLIV KDGGNMRQTR AMDIFSLGCI  840
MYYCITGGGH PFGETYERDT NILKNHPNLK PLQKQAEALN LISAMLTKNP EARPNMTAVL  900
GHPLWWSVDQ RLQLLVDVSD RVENEDREPD QTLLSALERF TQVAVGHNWG AVMDAELIGN  960
LGIYRRYDYT CLRDLLRVIR NKRNHFREMP ESLQQLLGPI PDGYYRYFST RFPNLLLAVF  1020
FFALQNLSTD ANLRKYWSQG PEWCGPFWDI FQYHAGLRNK ATKTPGSKKQ QPAVDSNSKP  1080
TSSNGNSNSN GIVTAAGSKG HSAAAAAVAV IKASPANGVT HTNSSTTQLG STTHTSSNSA  1140
NGMAGAVISY SAVVAAAAAA TSPLPAKRPA NSSSGPSSGK AALAGTAVAP AEAVAKVPDE  1200
PSVPIVGYEQ DEGNEVLHTP MFPRRPDKAT CDFYMKTGHC KYGEECCFDH PPEYAVSRTE  1260
LQLPFRPGET VCVFYLKNNQ CKYGPACKFH HPKLLPIYAG SAVSPSP*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16540.1	1e-20	C3H family protein