PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cz05g16110.t1
Organism
Chromochloris zofingiensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
Family C3H
Protein Properties Length: 295aa    MW: 31652.8 Da    PI: 7.7842
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cz05g16110.t1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH39.41e-12133156427
                    ---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                     +C ff+rtGtC yGdrCkF H++
  Cz05g16110.t1 133 QPCAFFLRTGTCAYGDRCKFLHPK 156
                    69********************96 PP
2zf-CCCH31.92.2e-10173198227
                    -S---SGGGGTS--TTTTT-SS-SSS CS
        zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f++r G+C +G +Ck++H++
  Cz05g16110.t1 173 QEPECSFYLRKGWCAFGVTCKYHHPE 198
                    689*********************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    
MTTTTDVPNL PNQQALQDAL VASGVNTNGL LSKQESYSEA CRPRTGVVVV SGLSQPTSAD  60
SDSCNSNTTS YSSGLNLIVA HPAGWTGGQQ PQMQQSIGQS SDHPAAQQHD LTDVQGGLLG  120
VSGPNRDPGS QKQPCAFFLR TGTCAYGDRC KFLHPKDRPP PVLSSRGYPL RPQEPECSFY  180
LRKGWCAFGV TCKYHHPEPT SPMVPYAATQ PVSYAMPGMA APGMVMPYAY YPPVAPTAHM  240
YPVPAAAMMR PMMAVPQSMH SGVNRQHLDD LTRQVENMSL APQASYAPVH YGRM*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.18e-20C3H family protein