PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz10g10240.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 572aa MW: 58873.9 Da PI: 7.396

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz10g10240.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.8	2.4e-15	267	293	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 yktelCr + +tGtC+yG++C+FaHg+ Cz10g10240.t1 267 YKTELCRSWEETGTCRYGSKCQFAHGR 293 9************************96 PP
2	zf-CCCH	46.2	7.2e-15	305	330	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte+Cr+fa tGtC+yG rC+F H+ Cz10g10240.t1 305 YKTEICRTFATTGTCPYGTRCRFVHS 330 9************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence
MLLSPAPGGK AGLEAVASPF PGGSQPLHRA LSLPPATPKQ YNSSQANLPL LTPSETVAGL 60 LPTAASVPTH SMVLSPSPMH PQFSTPSGFT PASPAPRPGM LSIPASPMMV TSSAMRRQAS 120 LTPAACLTPQ AIPAGMMELN RATSMPGLKS SQTPALALGG TAVSAVDAAL LHELLLADPS 180 LASSGGLASG QLLDPNLMLA AAGYAPMPGG SPTQDLVYDA QTGHLLGAIQ SSPALHGVID 240 YSLISPGLQQ LTSPAAAAGA KQQNGLYKTE LCRSWEETGT CRYGSKCQFA HGREELRPVM 300 RHPKYKTEIC RTFATTGTCP YGTRCRFVHS TQAGSGGNGQ AATAGTPAAN AGARMAAPSP 360 ITPDTALLTA AADGLAAQPN PVRRSLNMAA AGTPTRRLPI FTKLAAEKQS EEDARRNSHN 420 NNSMSDMQRT SSGMMMTYQQ EEGNTQLHGA GAIRDAQGDM LMCDQDINND GATAAAMADG 480 PPGLHPAMCG SPYWRGVNAA GVAAMSPGMT MPPPSLAGMM SAADLNGYTS TLPTVSEHLP 540 LACNGMQYHH QYQAQEAADH AVNAILTALR M*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence

MLLSPAPGGK AGLEAVASPF PGGSQPLHRA LSLPPATPKQ YNSSQANLPL LTPSETVAGL  60
LPTAASVPTH SMVLSPSPMH PQFSTPSGFT PASPAPRPGM LSIPASPMMV TSSAMRRQAS  120
LTPAACLTPQ AIPAGMMELN RATSMPGLKS SQTPALALGG TAVSAVDAAL LHELLLADPS  180
LASSGGLASG QLLDPNLMLA AAGYAPMPGG SPTQDLVYDA QTGHLLGAIQ SSPALHGVID  240
YSLISPGLQQ LTSPAAAAGA KQQNGLYKTE LCRSWEETGT CRYGSKCQFA HGREELRPVM  300
RHPKYKTEIC RTFATTGTCP YGTRCRFVHS TQAGSGGNGQ AATAGTPAAN AGARMAAPSP  360
ITPDTALLTA AADGLAAQPN PVRRSLNMAA AGTPTRRLPI FTKLAAEKQS EEDARRNSHN  420
NNSMSDMQRT SSGMMMTYQQ EEGNTQLHGA GAIRDAQGDM LMCDQDINND GATAAAMADG  480
PPGLHPAMCG SPYWRGVNAA GVAAMSPGMT MPPPSLAGMM SAADLNGYTS TLPTVSEHLP  540
LACNGMQYHH QYQAQEAADH AVNAILTALR M*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66810.1	2e-27	C3H family protein