PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cz10g12080.t1
Organism
Chromochloris zofingiensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
Family C3H
Protein Properties Length: 222aa    MW: 23079.9 Da    PI: 8.6697
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cz10g12080.t1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.83.1e-124063226
                   -S---SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                   kt+lC ++++ G C++GdrC+FaHg
  Cz10g12080.t1 40 KTKLCTRWLA-GDCRFGDRCNFAHG 63
                   8*********.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MDGAFPSQKG QSFEGSPGRG GGYGNGARPR GFRGTAENAK TKLCTRWLAG DCRFGDRCNF  60
AHGDEELRKL PPREDEFGPP GRGGYGGGPG RGYAPRGGYG GRGMGGGYGG RGRGYDDYYQ  120
GGAGGGGGYG GGYGGGGGND YAPPGPQGYG PPMGGPGPRE SQYGRPPPGM SEDAWAQQGY  180
PVHGPNGWVM YRAKDTGEAY YHNYNSNATQ WEKPADWPPN M*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107GGRGMGGG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.11e-09C3H family protein