PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz11g29050.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 489aa MW: 50387.6 Da PI: 6.9386

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz11g29050.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.9	7.4e-08	116	139	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt +C +f + G C++G++Ck++H+ Cz11g29050.t1 116 KTQICYDFTK-GMCSRGNKCKYSHD 139 89******.***********6 PP
2	zf-CCCH	19	2.5e-06	196	216	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C +f + G C++G C+++H+ Cz11g29050.t1 196 ICYDFVK-GVCQRGTDCRYSHD 216 8****.***********7 PP
3	zf-CCCH	22.5	2e-07	237	259	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 t C +f+r G C++G +Ck++H Cz11g29050.t1 237 TQVCYDFLR-GRCSRGITCKYSHN 259 778****.***********6 PP

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence
MASSIADIDS EYLAASLHAS FDKLNLGVLG VRNAQSAEAK ELEVLFEEAS TRSCSPNSQE 60 TSLTHPMSDL SGYNPDSAEG SPKACSDSGS GLSTSPDAVL RDSVHEDINA GILEGKTQIC 120 YDFTKGMCSR GNKCKYSHDI ATIVHFNSKE KGICFDYLRN QCHRGLLCRF SHDLSNIAQQ 180 CQVYNGAGTN TRTSSICYDF VKGVCQRGTD CRYSHDLTLI ARTARSNATP TIAARSTQVC 240 YDFLRGRCSR GITCKYSHNV ALLGSGILTT LPSGMPDVGV GVGSLAVPMS SLSPALPGMM 300 CAMDGYSAPV TPRVSNSGGG GGGGMPSAAV GNSMAFQAGI ANPSGLMPST KGVSDVLAAS 360 ASEKLALLAA LQQGRAMPQD GPSALADCAG YGSAPAMTLG ATLPPDMRAS ADGLARSHDS 420 FAAVHAGIRA MQKCSDNGGI TFPVRQSDNG ASSGTILSNA YMPGPAHLSR AYSAPAPAGP 480 AIHDVLGA*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence

MASSIADIDS EYLAASLHAS FDKLNLGVLG VRNAQSAEAK ELEVLFEEAS TRSCSPNSQE  60
TSLTHPMSDL SGYNPDSAEG SPKACSDSGS GLSTSPDAVL RDSVHEDINA GILEGKTQIC  120
YDFTKGMCSR GNKCKYSHDI ATIVHFNSKE KGICFDYLRN QCHRGLLCRF SHDLSNIAQQ  180
CQVYNGAGTN TRTSSICYDF VKGVCQRGTD CRYSHDLTLI ARTARSNATP TIAARSTQVC  240
YDFLRGRCSR GITCKYSHNV ALLGSGILTT LPSGMPDVGV GVGSLAVPMS SLSPALPGMM  300
CAMDGYSAPV TPRVSNSGGG GGGGMPSAAV GNSMAFQAGI ANPSGLMPST KGVSDVLAAS  360
ASEKLALLAA LQQGRAMPQD GPSALADCAG YGSAPAMTLG ATLPPDMRAS ADGLARSHDS  420
FAAVHAGIRA MQKCSDNGGI TFPVRQSDNG ASSGTILSNA YMPGPAHLSR AYSAPAPAGP  480
AIHDVLGA*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06410.1	4e-06	C3H family protein