PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz14g19330.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

C3H

Protein Properties

Length: 618aa MW: 66957.5 Da PI: 7.0435

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz14g19330.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.2	1.2e-07	284	303	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C+++ + G+C +Gd+C++aHg Cz14g19330.t1 284 CPDYKQ-GFCLRGDTCQYAHG 303 ****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 618 aa Download sequence
MAAPDQVVGH YVLQGSNWVP ALAQSTDLFK AVASDNISVI ESQFDNDHLS QVVNAFYVVL 60 YWGEAGVPQD GNPAASETDH DTKDQGQPFQ QHSQVQAKSR TLTMLAAYHG SLRVLAYLLS 120 KGAEPTLAAP GDGATAYELA EAGAGSNAAT VQAMLDDAAG KFAPGNQSFG AVPSPHITPT 180 QRFHADTGAS DRLTRRTPAA LPSGVDQHEQ AAEGDPFSMD SLPYSTSELT RPEYSTDQFR 240 MFGFKVLRCS KRYAHDWRAC PFGHPTENAR RRDPREFKYC SIACPDYKQG FCLRGDTCQY 300 AHGVFECWLH PSRYRTQLCK DGSGCRRPVC FFAHSLAELR TPTHAFVPKP EERLRVVPAH 360 MMAVGSFAMP TDSYASEGAF PADQNPAFVG SSSSAKPLLD LGPNAAPDVA VRLAGGMMGG 420 LHPDQQPDSP TKQLLGSSSA MQQQQQQQQQ FAPSMTAPRM SNAFARRHGL NPKDHPIVNL 480 QRMAMQQQQQ QQLIPAHYGP LPMPGSAMQN PAMHNPGLQN PAMVAPNMYP KANRHRKSGV 540 QTPQQPLPPP PPFGPPPPFY AEPPGIVAPA MQDPHSLALL FANMNVGPAL QEHGGMQPGM 600 FMAPGMMPPP YMDQPHL*

Sequence ? help Back to Top

Protein Sequence Length: 618 aa Download sequence

MAAPDQVVGH YVLQGSNWVP ALAQSTDLFK AVASDNISVI ESQFDNDHLS QVVNAFYVVL  60
YWGEAGVPQD GNPAASETDH DTKDQGQPFQ QHSQVQAKSR TLTMLAAYHG SLRVLAYLLS  120
KGAEPTLAAP GDGATAYELA EAGAGSNAAT VQAMLDDAAG KFAPGNQSFG AVPSPHITPT  180
QRFHADTGAS DRLTRRTPAA LPSGVDQHEQ AAEGDPFSMD SLPYSTSELT RPEYSTDQFR  240
MFGFKVLRCS KRYAHDWRAC PFGHPTENAR RRDPREFKYC SIACPDYKQG FCLRGDTCQY  300
AHGVFECWLH PSRYRTQLCK DGSGCRRPVC FFAHSLAELR TPTHAFVPKP EERLRVVPAH  360
MMAVGSFAMP TDSYASEGAF PADQNPAFVG SSSSAKPLLD LGPNAAPDVA VRLAGGMMGG  420
LHPDQQPDSP TKQLLGSSSA MQQQQQQQQQ FAPSMTAPRM SNAFARRHGL NPKDHPIVNL  480
QRMAMQQQQQ QQLIPAHYGP LPMPGSAMQN PAMHNPGLQN PAMVAPNMYP KANRHRKSGV  540
QTPQQPLPPP PPFGPPPPFY AEPPGIVAPA MQDPHSLALL FANMNVGPAL QEHGGMQPGM  600
FMAPGMMPPP YMDQPHL*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12850.1	2e-56	C3H family protein