PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz16g00200.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

MYB

Protein Properties

Length: 858aa MW: 89545.4 Da PI: 4.8169

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz16g00200.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.4	1.8e-19	132	175	2	47
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grWT++E+++l+++v+ +G+ WktIar+++ gRt kqc++rw+++ Cz16g00200.t1 132 GRWTKQEHDKLAELVTVHGTL-WKTIARKLP-GRTSKQCRERWLNH 175 8******************.*****.**********97 PP
2	Myb_DNA-binding	36	1.7e-11	182	225	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W+ +Ed ++++ +++G+ W++Ia + gR+++++k+rw++ Cz16g00200.t1 182 KGAWSLQEDYFIARLYTMYGSS-WTKIAPFLS-GRSDNSIKNRWNT 225 79****************99.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 858 aa Download sequence
MMAGIKTSTH DSNTLPVDAT PIAASVSAAA GSRTHPTPRG GSSTQLKRES SGTRPAGVRR 60 ETSLPVRYQN DTPDQDQTIK VEKQQQQLQQ QHQQQQQQQQ QRRRSEATTA YTSEDDEGGE 120 EGPSGSGQAV EGRWTKQEHD KLAELVTVHG TLWKTIARKL PGRTSKQCRE RWLNHGIADL 180 KKGAWSLQED YFIARLYTMY GSSWTKIAPF LSGRSDNSIK NRWNTKRRNK HPDPFTSEGE 240 GDVLWTYVHE LMVNEDRHAA WNTAVQVLTE GRRQQLEEEL NARVAAHLEG DTGGGGLRGD 300 DVDHATAGGA GGGGGGDRKR RRPRSTSDAG DEPYQAAGAP ATAAVVDLSS LVAAGGAAAP 360 SEADYIQRLA ARQGIKLAIP AVSAGKSAVV QQDPASSAVP VLAPPATAAY LPAGASFAPL 420 SATATPSLVP AFHPSVAMDI ALRLGLPPSM VLQTAGVMNY VDPVVLTSLP QSPWLFAAPP 480 LMLPLMKPAT TDKEQEDGSS EQQQQATVAI DPMTGLQLSG APVIFPGMPV GEGLQQQLPQ 540 QQQQQQQTTS LVAALTAADD SVAAGLHQLP PIMPLQQPLA ISPLQAPAPA SELDTAQESH 600 VGAVWSAAAL DNGQKRQRLE VGNNNTAAAL YALSMAPGAA RGLVLNMPLL AASHGMPPGT 660 LMLASPSGAG GLTTYPAAML TGHEGLEGYT AGNLTGPLLS LLSQPHTAVA GEHMLGVHVA 720 DQPGVIGATA TGDVHEQGEG GQGDAAAAVQ PAGVGVEAVN VGTFVGETGT GDVRVEHQEG 780 GGMVPEEVTE QQEQQQIDTS GTATGVGESV TAADMQTAQA DTVMAVQVAD QEQQSEALAQ 840 QGNQDQAAAD NVQEQTG*

Sequence ? help Back to Top

Protein Sequence Length: 858 aa Download sequence

MMAGIKTSTH DSNTLPVDAT PIAASVSAAA GSRTHPTPRG GSSTQLKRES SGTRPAGVRR  60
ETSLPVRYQN DTPDQDQTIK VEKQQQQLQQ QHQQQQQQQQ QRRRSEATTA YTSEDDEGGE  120
EGPSGSGQAV EGRWTKQEHD KLAELVTVHG TLWKTIARKL PGRTSKQCRE RWLNHGIADL  180
KKGAWSLQED YFIARLYTMY GSSWTKIAPF LSGRSDNSIK NRWNTKRRNK HPDPFTSEGE  240
GDVLWTYVHE LMVNEDRHAA WNTAVQVLTE GRRQQLEEEL NARVAAHLEG DTGGGGLRGD  300
DVDHATAGGA GGGGGGDRKR RRPRSTSDAG DEPYQAAGAP ATAAVVDLSS LVAAGGAAAP  360
SEADYIQRLA ARQGIKLAIP AVSAGKSAVV QQDPASSAVP VLAPPATAAY LPAGASFAPL  420
SATATPSLVP AFHPSVAMDI ALRLGLPPSM VLQTAGVMNY VDPVVLTSLP QSPWLFAAPP  480
LMLPLMKPAT TDKEQEDGSS EQQQQATVAI DPMTGLQLSG APVIFPGMPV GEGLQQQLPQ  540
QQQQQQQTTS LVAALTAADD SVAAGLHQLP PIMPLQQPLA ISPLQAPAPA SELDTAQESH  600
VGAVWSAAAL DNGQKRQRLE VGNNNTAAAL YALSMAPGAA RGLVLNMPLL AASHGMPPGT  660
LMLASPSGAG GLTTYPAAML TGHEGLEGYT AGNLTGPLLS LLSQPHTAVA GEHMLGVHVA  720
DQPGVIGATA TGDVHEQGEG GQGDAAAAVQ PAGVGVEAVN VGTFVGETGT GDVRVEHQEG  780
GGMVPEEVTE QQEQQQIDTS GTATGVGESV TAADMQTAQA DTVMAVQVAD QEQQSEALAQ  840
QGNQDQAAAD NVQEQTG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	318	322	RKRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G02320.2	1e-25	MYB family protein