PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

Cz16g17050.t1

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

Protein Properties

Length: 264aa MW: 27344.1 Da PI: 8.5015

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz16g17050.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23.7	1.2e-07	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+k+Fs+ s+L++H+ +H Cz16g17050.t1 110 FPCPECSKVFSNISSLRKHMHMH 132 89******************999 PP
2	zf-C2H2	16.3	2.9e-05	137	161	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C Cgk F + L+rH+ tH Cz16g17050.t1 137 HVCDypGCGKAFVDGGKLTRHLLTH 161 689999*****************99 PP
3	zf-C2H2	13.7	0.00019	167	190	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ykCp Cgk F n ++H + H Cz16g17050.t1 167 YKCPQCGKAFLMDFNVRSHWKQvH 190 9***************99999777 PP

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence
MPCRVPTKVV VGGPEVSIMK WVAQTPLQNP VPPLHMPTNK GVSQPDVADV GSVAKVQHSS 60 SSANLADVAA SSAVPSHTAS PAATAGTPGY SPAAATLQGP NAATTGAQQF PCPECSKVFS 120 NISSLRKHMH MHGEKLHVCD YPGCGKAFVD GGKLTRHLLT HSTDRNYKCP QCGKAFLMDF 180 NVRSHWKQVH KGLPMPPSLY PDKSTPPPPA VQQQQASPVG PTQLPATGTA AAELLESTPT 240 TQAPSAAAIA AAISTLHNMD GDT*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G06634.2	5e-25	C2H2 family protein