PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cz17g10050.t1
Organism
Chromochloris zofingiensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris
Family C3H
Protein Properties Length: 449aa    MW: 47616.3 Da    PI: 6.9682
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cz17g10050.t1genomePhytozomeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.32.9e-0986105626
                    -SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                    C++f++ G Ck+Gd C+FaHg
  Cz17g10050.t1  86 CPDFRK-GSCKRGDACPFAHG 105
                    ******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    
MAVPAQTTGS SECTIEDNIA LQGVDDTDLE LDKPEFSTNE FRMYGFKVVN CTYTHAHDWT  60
ECPFAHPGEK ARRRDSNLFS YTGLACPDFR KGSCKRGDAC PFAHGVFECW LHPSRYRTQL  120
CKDAPNCTRR VCFFAHAISE LRTADDCDLP LPDLSAFPGF TDSGSDSSDS SDVHLSRSSS  180
STDCQDEHSS SASTLVSAKL PPIKTCPVST CCTTNNTRQL TQRASSLASS SSAALRIDGL  240
VGGATEAAKG LELPLHTCFG SLDLGGSGVI GNMASLDAAK AYNVTVAACH ELCHQGRWDG  300
TGSKQNPLYA QHVWLAAQRA AGYGLPSAMP AQHHPLALSA VSKEQLTDPY RHLHHPGLLG  360
GDHLRGHASG HVSAVARDAA CSAWAHSIAS AAAAAAAGME CARPRSAIPG TSTINPLGQS  420
LPCMPPSGEA RLPLPPKALL PHNRWTIR*
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.25e-54C3H family protein