PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cz17g16070.t1

Organism

Chromochloris zofingiensis

Taxonomic ID

31302

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Sphaeropleales; Chromochloridaceae; Chromochloris

Family

MYB

Protein Properties

Length: 789aa MW: 84174.7 Da PI: 6.4117

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cz17g16070.t1	genome	Phytozome	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	68.2	1.4e-21	15	60	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+WT+eEdell ++v+++G+++W++Ia+ ++ gRt+k+c++rw++ Cz17g16070.t1 15 KGSWTPEEDELLRKCVTKHGPRNWSLIAKSIP-GRTGKSCRLRWLNQ 60 799***************************.*********996 PP
2	Myb_DNA-binding	49.9	7.1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+++++Ed + a++ +G++ W++Ia+ ++ gRt++ +k++w++ Cz17g16070.t1 67 KGPFSQDEDATIMAAHAIYGNK-WASIAKLLP-GRTDNAVKNHWNST 111 79******************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence
MRPRGHEDYG EELTKGSWTP EEDELLRKCV TKHGPRNWSL IAKSIPGRTG KSCRLRWLNQ 60 LNPNVRKGPF SQDEDATIMA AHAIYGNKWA SIAKLLPGRT DNAVKNHWNS TLKRRRHEFA 120 QGGVLDVSDV IAALQARLSN QKEPESGEDE DDDDPNPPAL LTQFNSVEST ETVAVACPQP 180 AGAQRRQRSG ELPEHQHQHQ QQLLQPRHKR QRKGPGPERH SDAEHPGLGL VLARSLSNPL 240 KSESPLDAVA AVAAAELHAS SSSASHEETG DSPHPYATAN HGAAAANNDE MMEVDHDDQD 300 AATAITNRLQ AAAARIAYRQ RLEELVNSDA TAGQHESNHL RRSQRARKAR RWEEHMAEGF 360 TSGDDDDGDQ SPSNEWDELP HHMTNGRASH GARASHPRWM SNGRYRYQPA PQEDVYCAFA 420 TAKSQPAAGS YQAAPGIGAT KPKALVLPTN QQLPSDSNCE AAAYNRPEQP EQGLCDGAVH 480 NDYDYDSSSD CFGEDWAAEA LTQLAGHKSG QQSIAGATTA GHHRGAVARG GGHTPDSKLC 540 KAKHRIGSSK GGNPAVERVL LPALPVKTQA QQQQQQQQQQ ENVELTLCPG QAVAEAVADD 600 SKPPSVKCDP EADLTQLTHY TPECVMSQAV ADRSAEVDAA VARAVAVAVP EVLTGFAQYV 660 AAALTAASGL SESAAAGCST SNAAGLLPTA ATALIDALQL AVQHRVKATA MLHLAAAGAH 720 DGQTDGAESN VVSTPNSNAV LQQQRIDSET LRQLARHAVE TIAVAAVAKA VAARAGAQGA 780 NARIQPPQ*

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence

MRPRGHEDYG EELTKGSWTP EEDELLRKCV TKHGPRNWSL IAKSIPGRTG KSCRLRWLNQ  60
LNPNVRKGPF SQDEDATIMA AHAIYGNKWA SIAKLLPGRT DNAVKNHWNS TLKRRRHEFA  120
QGGVLDVSDV IAALQARLSN QKEPESGEDE DDDDPNPPAL LTQFNSVEST ETVAVACPQP  180
AGAQRRQRSG ELPEHQHQHQ QQLLQPRHKR QRKGPGPERH SDAEHPGLGL VLARSLSNPL  240
KSESPLDAVA AVAAAELHAS SSSASHEETG DSPHPYATAN HGAAAANNDE MMEVDHDDQD  300
AATAITNRLQ AAAARIAYRQ RLEELVNSDA TAGQHESNHL RRSQRARKAR RWEEHMAEGF  360
TSGDDDDGDQ SPSNEWDELP HHMTNGRASH GARASHPRWM SNGRYRYQPA PQEDVYCAFA  420
TAKSQPAAGS YQAAPGIGAT KPKALVLPTN QQLPSDSNCE AAAYNRPEQP EQGLCDGAVH  480
NDYDYDSSSD CFGEDWAAEA LTQLAGHKSG QQSIAGATTA GHHRGAVARG GGHTPDSKLC  540
KAKHRIGSSK GGNPAVERVL LPALPVKTQA QQQQQQQQQQ ENVELTLCPG QAVAEAVADD  600
SKPPSVKCDP EADLTQLTHY TPECVMSQAV ADRSAEVDAA VARAVAVAVP EVLTGFAQYV  660
AAALTAASGL SESAAAGCST SNAAGLLPTA ATALIDALQL AVQHRVKATA MLHLAAAGAH  720
DGQTDGAESN VVSTPNSNAV LQQQRIDSET LRQLARHAVE TIAVAAVAKA VAARAGAQGA  780
NARIQPPQ*

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-47	MYB family protein