PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00030.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 342aa MW: 37642.6 Da PI: 7.9995

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00030.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.6e-24	67	111	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++ +++k+CErH+hr+r+rsrk++e+ Dr00030.1 67 DPEPGRCRRTDGKKWRCSKDAHPDSKYCERHMHRSRNRSRKPVET 111 79****************************************997 PP
2	QLQ	61.9	1.7e-21	13	48	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 aFTa+Q+ +L++Q+l+yKyL+a++PvPp+Ll++i++ Dr00030.1 13 AFTASQWVELEHQALIYKYLMAGVPVPPDLLLPIRR 48 8*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MHSTAVAGWR SAAFTASQWV ELEHQALIYK YLMAGVPVPP DLLLPIRRSF FHFSALGYPS 60 CYGMKLDPEP GRCRRTDGKK WRCSKDAHPD SKYCERHMHR SRNRSRKPVE TQAISKSQSS 120 SSTVTSLSPT VSAGNGRGSG SFQSFPLHSV SGRNNPQTSR MESNAPLLHM DSASFGFDDK 180 EFRYVHGGKS DANVDGHNVL TGESASDKGL LGGELDRWWS SFPSSKSSYH PELQLQAANN 240 LGQTDIMSSL TMQQHSLLGS EYAGYGSISS EQEKHESGQQ VLRPLFDEWP KTRDHHPWSL 300 GFSGDDHSNR TTSSFSATQL SMSIPMPSAD FSTTACSSSP NA

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MHSTAVAGWR SAAFTASQWV ELEHQALIYK YLMAGVPVPP DLLLPIRRSF FHFSALGYPS  60
CYGMKLDPEP GRCRRTDGKK WRCSKDAHPD SKYCERHMHR SRNRSRKPVE TQAISKSQSS  120
SSTVTSLSPT VSAGNGRGSG SFQSFPLHSV SGRNNPQTSR MESNAPLLHM DSASFGFDDK  180
EFRYVHGGKS DANVDGHNVL TGESASDKGL LGGELDRWWS SFPSSKSSYH PELQLQAANN  240
LGQTDIMSSL TMQQHSLLGS EYAGYGSISS EQEKHESGQQ VLRPLFDEWP KTRDHHPWSL  300
GFSGDDHSNR TTSSFSATQL SMSIPMPSAD FSTTACSSSP NA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	3e-40	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr00030.1