PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00179.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

SRS

Protein Properties

Length: 442aa MW: 46033.5 Da PI: 7.2726

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00179.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	220.6	3.2e-68	217	376	3	155
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 +g+a+CqdCGnqakkdC+h+RCRtCCksrgf+C+thvkstWvpaa+rrerq +++aa+ a +s ++++sk++r s++++++s+t++s+++++++++t Dr00179.1 217 AGGATCQDCGNQAKKDCNHHRCRTCCKSRGFECSTHVKSTWVPAARRRERQIAATAAA--AGSSGSTSTSKKPRLI-SSQTTTTSHTSTSNNTPPRSFDT 313 5789********************************************77666654..4445578888899875.888999999********** PP DUF702 103 ss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGleek 155 ss lP +v+++avf+cvrv+s+ddge+e+aYq+ v igGhvfkG+LydqGl+++ Dr00179.1 314 SSshqdagfregLPGHVRAPAVFKCVRVTSIDDGEDEYAYQAMVRIGGHVFKGFLYDQGLDDQ 376 999******************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 442 aa Download sequence
MPSGLPIVLA SQQQSQQQQQ QQEEAVRQSQ PPLLQKQEGN ELVVASGRRF PSDTGAFADW 60 VASSATGRGD DLCLGFNAGA NAAAAAAAAA AAAAGGPNSA GVPWGSSTTS SARQSLNYGL 120 ADVSMLVVAP AASFHHHHHH HESLLPSSDH PIIPLLTAAP CVGDDDVRAK HSGIQFWQPQ 180 THPPPPQNPN PNPTIPYLKK PVPMLDAPGG ILSSVAAGGA TCQDCGNQAK KDCNHHRCRT 240 CCKSRGFECS THVKSTWVPA ARRRERQIAA TAAAAGSSGS TSTSKKPRLI SSQTTTTSHT 300 STSNNTPPRS FDTSSSHQDA GFREGLPGHV RAPAVFKCVR VTSIDDGEDE YAYQAMVRIG 360 GHVFKGFLYD QGLDDQTRNE DINNNTSTSN NNNNSNNNNT GAIPNISDLH LGGGPSDVFA 420 GGGSSGGGGL LGGTTTYGNP IN

Sequence ? help Back to Top

Protein Sequence Length: 442 aa Download sequence

MPSGLPIVLA SQQQSQQQQQ QQEEAVRQSQ PPLLQKQEGN ELVVASGRRF PSDTGAFADW  60
VASSATGRGD DLCLGFNAGA NAAAAAAAAA AAAAGGPNSA GVPWGSSTTS SARQSLNYGL  120
ADVSMLVVAP AASFHHHHHH HESLLPSSDH PIIPLLTAAP CVGDDDVRAK HSGIQFWQPQ  180
THPPPPQNPN PNPTIPYLKK PVPMLDAPGG ILSSVAAGGA TCQDCGNQAK KDCNHHRCRT  240
CCKSRGFECS THVKSTWVPA ARRRERQIAA TAAAAGSSGS TSTSKKPRLI SSQTTTTSHT  300
STSNNTPPRS FDTSSSHQDA GFREGLPGHV RAPAVFKCVR VTSIDDGEDE YAYQAMVRIG  360
GHVFKGFLYD QGLDDQTRNE DINNNTSTSN NNNNSNNNNT GAIPNISDLH LGGGPSDVFA  420
GGGSSGGGGL LGGTTTYGNP IN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-64	SRS family protein

Link Out ? help Back to Top
Ensembl	Dr00179.1