PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00359.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family NF-YA
Protein Properties Length: 377aa    MW: 41419.4 Da    PI: 8.5723
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00359.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.68.5e-33231287158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekkl +k rkpylheSRh+hA+rR+Rg+gGrF
  Dr00359.1 231 EEPVYVNAKQYHGILRRRQSRAKAELEKKL-IKVRKPYLHESRHQHAMRRARGCGGRF 287
                69****************************.**************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    
MSCTPFPEAM MTNTCKFLIR PSFGTCLACP TPKDTWRFSR LPFRWRNPHI GAVPDSPTLN  60
IKVGSMGTRP MSANTVEHNG QGSQPWWGSS ALSTAVPPVI SESVLKPASA VNPDGADGNQ  120
SVGQSHQNDQ EDDNSDVSKQ LQNLGTQTGS VGSYGQERQQ QPPVSSVMPT VMPEYLAPHT  180
QLELGQSIGC AAYSYTDPYS LMGAYGNPAL MYPHLIGMPH TRMPLPLEMT EEPVYVNAKQ  240
YHGILRRRQS RAKAELEKKL IKVRKPYLHE SRHQHAMRRA RGCGGRFLNT KKNDGNASDH  300
NPENSVNSGD SLLVSSTLTS QNMNHELVST TVSQQFSFHL SNFHSVPGDT EDKGDYSGQR  360
HGAILANRHP SRAVSIQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-46NF-YA family protein