PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00482.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 600aa MW: 64144.1 Da PI: 8.512

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00482.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.1e-05	110	132	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C+ C+k F r nL+ H r H Dr00482.1 110 FICEVCNKGFQREQNLQLHRRGH 132 89*******************88 PP
2	zf-C2H2	13.1	0.00029	186	208	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k++ +s+ k H +t+ Dr00482.1 186 WKCEKCSKRYAVQSDWKAHSKTC 208 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 600 aa Download sequence
MAAASSSAST FFTTRDDVLD HHNIQVKQQQ QQQQQQHHHH HHQQPPPQQQ SSPLPIPSSS 60 VTAVPPPKKR RNLPGNPSNH SFIPNETEVT SPDAEVIALS PKTLMATNRF ICEVCNKGFQ 120 REQNLQLHRR GHNLPWKLRQ KNPKEVRRKV YLCPEPTCVH HDPSRALGDL TGIKKHFCRK 180 HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE 240 SGRLPTSLST IGGHLYGNSS MALGLSQMNS QLSSIQEQGH TSSDVLRLGR GGGGSQFDHL 300 IAPSSGHSTF GASNPPLSST FFLGGGAGSN QGYNEEGLVL QSKPFHGLMQ LPDLQPNNNS 360 STSTGPGAAN LFNLSFFPNS NSSSNINSSN NNNVGSLLMS NQFSNGNGDG ETGSHFTGNL 420 MSGHHIGMSS MFHTMQNESM IPQMSATALL QKAAQMGSSS SGGTMLRGIG IGGGGGGGGG 480 GGDNLRTQID SETHFHDLMN TLNNGSNGMF GVSGGLSTFG GNCTGNADQE QVTGFGGISS 540 AGLCNIGQSD GVLTRDFLGV GSMVRSMASG INQREQHAGF DIGSLEPEVK PASSSRSFAS

Sequence ? help Back to Top

Protein Sequence Length: 600 aa Download sequence

MAAASSSAST FFTTRDDVLD HHNIQVKQQQ QQQQQQHHHH HHQQPPPQQQ SSPLPIPSSS  60
VTAVPPPKKR RNLPGNPSNH SFIPNETEVT SPDAEVIALS PKTLMATNRF ICEVCNKGFQ  120
REQNLQLHRR GHNLPWKLRQ KNPKEVRRKV YLCPEPTCVH HDPSRALGDL TGIKKHFCRK  180
HGEKKWKCEK CSKRYAVQSD WKAHSKTCGT REYRCDCGTL FSRRDSFITH RAFCDALAQE  240
SGRLPTSLST IGGHLYGNSS MALGLSQMNS QLSSIQEQGH TSSDVLRLGR GGGGSQFDHL  300
IAPSSGHSTF GASNPPLSST FFLGGGAGSN QGYNEEGLVL QSKPFHGLMQ LPDLQPNNNS  360
STSTGPGAAN LFNLSFFPNS NSSSNINSSN NNNVGSLLMS NQFSNGNGDG ETGSHFTGNL  420
MSGHHIGMSS MFHTMQNESM IPQMSATALL QKAAQMGSSS SGGTMLRGIG IGGGGGGGGG  480
GGDNLRTQID SETHFHDLMN TLNNGSNGMF GVSGGLSTFG GNCTGNADQE QVTGFGGISS  540
AGLCNIGQSD GVLTRDFLGV GSMVRSMASG INQREQHAGF DIGSLEPEVK PASSSRSFAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02080.1	1e-113	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr00482.1