PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00521.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 250aa MW: 28427.5 Da PI: 8.9084

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00521.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98.9	2e-31	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gklye+ Dr00521.1 9 KRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLYEFG 58 79**********************************************95 PP
2	K-box	97	2.9e-32	99	176	9	86
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkeke 86 +++++++++qe++kLk++ e+Lqr+qRhllGedL++Ls+keLqqLe+qLe++l + R++K++++l+q+eel+kk +e Dr00521.1 99 IANRDSQNWCQEVSKLKAKFESLQRSQRHLLGEDLGPLSVKELQQLERQLETALAQARQRKTQIMLDQMEELRKKLQE 176 567889*********************************************************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 250 aa Download sequence
MGRGRVELKR IENKINRQVT FSKRRNGLLK KAYELSVLCD AEIALIIFSS RGKLYEFGSA 60 GALSIGVLPL WRQDELILVT SNTLERYKRC CYNAHDLTIA NRDSQNWCQE VSKLKAKFES 120 LQRSQRHLLG EDLGPLSVKE LQQLERQLET ALAQARQRKT QIMLDQMEEL RKKLQEEGVS 180 FSAIQGSWEG DISTALPNHG FTLHPHSSSM DAPILQIGYH PFVPPEAAAM PRNSNTTNHG 240 ENNFMHGWIL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45650.1	5e-84	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr00521.1