PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00707.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family M-type_MADS
Protein Properties Length: 112aa    MW: 13184.4 Da    PI: 10.446
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00707.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.3e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               krien +nrqvtfskRrng+lKK +ELS+LCd+++a+i+fs+ gkl  +ss
  Dr00707.1  9 KRIENMMNRQVTFSKRRNGLLKKVYELSILCDIDIALIMFSPAGKLVMFSS 59
               79********************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    
MGRAKIQIKR IENMMNRQVT FSKRRNGLLK KVYELSILCD IDIALIMFSP AGKLVMFSSK  60
KSSRDSIRKN IEDLCNEIKE CKIKLEEDTK KLRDLSQQFY XIKGWKIIYT SN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.18e-28MIKC_MADS family protein