PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00797.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 256aa MW: 29197.5 Da PI: 9.3961

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00797.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	84.3	7.4e-27	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n++ rqvtfskRrng+lKKA+EL +LCda++ +i+fsstg+ly+yss Dr00797.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDADIGLIVFSSTGRLYDYSS 59 8***********************************************96 PP
2	K-box	83.5	4.6e-28	81	171	9	99
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++ + +q+e++ L+++++nLq+++R+llGedL L++k+Lq++e+qLe sl+++R+kK+++l+e+i+el +k k +q+en++L kk++ Dr00797.1 81 SLSSEIKFWQKEATSLRQQLHNLQETHRQLLGEDLLGLTVKDLQSIENQLEISLRNVRTKKEQVLTEEINELNRKGKLIQQENMELYKKVQ 171 4567899*********************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD ADIGLIVFSS TGRLYDYSST 60 NMKSIIDRYN KAKEVHNQEL SLSSEIKFWQ KEATSLRQQL HNLQETHRQL LGEDLLGLTV 120 KDLQSIENQL EISLRNVRTK KEQVLTEEIN ELNRKGKLIQ QENMELYKKV QFVCQESMGL 180 QNKVYAVWGS NVGVITRGSM IPCAFSITED AHVPVHLELS QPQPQPQKHG QEQTDISQMT 240 APKLRLQLQC DGALPL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57230.1	9e-95	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr00797.1