PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00813.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 398aa MW: 45525.7 Da PI: 8.5241

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00813.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.4	6.5e-07	92	113	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H Dr00813.1 92 TCEECGASFRKPAHLKQHMQSH 113 6*******************99 PP
2	zf-C2H2	16.5	2.3e-05	119	143	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dC+ s++rk++L+rH +H Dr00813.1 119 FACPldDCPHSYRRKDHLTRHSLKH 143 78*******************9998 PP
3	zf-C2H2	15.4	5.3e-05	148	173	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++Cp +C++ F + n++rH + H Dr00813.1 148 FTCPldNCNRKFAFQGNMTRHVKEfH 173 89********************9988 PP
4	zf-C2H2	16.2	3e-05	186	210	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H tH Dr00813.1 186 HVCQeeGCGKVFKYASRLRKHEGTH 210 789999***************8777 PP
5	zf-C2H2	11	0.0013	220	243	3	23
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C+ C k F++++ Lk Hi + H Dr00813.1 220 CGepSCLKQFTNSECLKAHIESsH 243 66668***************9988 PP
6	zf-C2H2	16.6	2.3e-05	280	304	2	23
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs+ksnL++H++ H Dr00813.1 280 KCTfeDCLCTFSNKSNLTKHLKAvH 304 69999****************9877 PP

Sequence ? help Back to Top
Protein Sequence Length: 398 aa Download sequence
MGTAAIDAEE ATSSPSPSPS PALALEETEA MVKEIKKPVF RDIRRYYCEF CGICRSKKAL 60 IRSHILSHHQ EDMADDKKGG IEAATEEKGG NTCEECGASF RKPAHLKQHM QSHSLQRPFA 120 CPLDDCPHSY RRKDHLTRHS LKHEGKIFTC PLDNCNRKFA FQGNMTRHVK EFHNDVTTAN 180 GSEKKHVCQE EGCGKVFKYA SRLRKHEGTH VKLEYVEVIC GEPSCLKQFT NSECLKAHIE 240 SSHRYIKCEV CGARQLKKNF KRHKRAHDRK RGKCTTERVK CTFEDCLCTF SNKSNLTKHL 300 KAVHEDCRPF TCTIADCGQK FSYKHVRDNH EKSAHVYVQG DFVETDELFH SQPRGGRKRK 360 CLSVESLLRK RIVPPAEAST LDDGTEYLRW LLSDDNQE

Sequence ? help Back to Top

Protein Sequence Length: 398 aa Download sequence

MGTAAIDAEE ATSSPSPSPS PALALEETEA MVKEIKKPVF RDIRRYYCEF CGICRSKKAL  60
IRSHILSHHQ EDMADDKKGG IEAATEEKGG NTCEECGASF RKPAHLKQHM QSHSLQRPFA  120
CPLDDCPHSY RRKDHLTRHS LKHEGKIFTC PLDNCNRKFA FQGNMTRHVK EFHNDVTTAN  180
GSEKKHVCQE EGCGKVFKYA SRLRKHEGTH VKLEYVEVIC GEPSCLKQFT NSECLKAHIE  240
SSHRYIKCEV CGARQLKKNF KRHKRAHDRK RGKCTTERVK CTFEDCLCTF SNKSNLTKHL  300
KAVHEDCRPF TCTIADCGQK FSYKHVRDNH EKSAHVYVQG DFVETDELFH SQPRGGRKRK  360
CLSVESLLRK RIVPPAEAST LDDGTEYLRW LLSDDNQE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	1e-126	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr00813.1