PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00867.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family C2H2
Protein Properties Length: 394aa    MW: 43202.7 Da    PI: 8.6538
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00867.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05161183223
                EETTTTEEESSHHHHHHHHHH.T CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                +Cp+Cg+sF   + L++H  + H
  Dr00867.1 161 SCPKCGESFAKLEALESHHLSkH 183
                6*****************99877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    
MPTVWFSLKK SLHCRSEPCD VYDPKLKRSG RSGCSRSIAN LKDVIHGSKR HLERPASYSP  60
RSIGSSEFLN PIAHEVILSD SKCELKITGF GACHESIGTL RPGTPGPWGQ LPSDRVVRCA  120
TVPKRSAVPF GDRDGAHSVS LATPKAATFA EISAVSCVPV SCPKCGESFA KLEALESHHL  180
SKHAVTELVE GDSSRKIVEI ICRASWLKTE SNCGRIERVL KVHNTQKTLA RFEEYRETVK  240
IKAAKLPKKH PRCLADGNEL LRFHGTTISC SLGMNGSSSL CTLDKCSICQ IIRNGFSMQE  300
ETKEHIGVFT TATSGRAFDS IDLPEDDPFT RKALLVCRVI AGRVHRPLDN YQELAGQSGF  360
DSLAGKVGLY ANIEELYLLN PRALLPCFVV ICKL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-169C2H2 family protein