PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr00895.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family HD-ZIP
Protein Properties Length: 768aa    MW: 84294.7 Da    PI: 5.8163
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr00895.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2093148156
                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  Dr00895.1  93 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 148
                688999***********************************************999 PP
2START57.93.3e-19284396194
                HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEEC CS
      START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevis 86 
                ela +a++el+++a+++ep+W+        e +n++e++++f+++ +      ++ea+r+++vv+m++ +lve+l+d++ qW++ +     +a tlev+s
  Dr00895.1 284 ELAVAAMEELIRMAQLGEPLWTPAGldnsmETLNEEEYVRTFPRGIGpkpfgLKSEASRETAVVIMNHINLVEILMDVN-QWSTVFSgivsRAVTLEVLS 382
                57899****************9887888899*************999********************************.******************** PP

                TT......EEEEEE CS
      START  87 sg......galqlm 94 
                +g      galq+m
  Dr00895.1 383 TGvagnynGALQVM 396
                **999999999988 PP
3START48.42.7e-16422465163206
                EEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
      START 163 kvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                +v+wvehv++++r++h+++rslv+sgla+gak+wvatl+rqce+
  Dr00895.1 422 QVIWVEHVEVDDRSVHNIYRSLVNSGLAFGAKRWVATLDRQCER 465
                8*****************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    
MPAGIMIPAR HMPPMIGRNG GTGFASSSAL SLGQPNMLEG QQLPLQHQLE MAQTTGESEM  60
IRVREEDFES KSGSENIECA SGDDQDPNNR PKKKRYHRHT QHQIQEMEAF FKECPHPDDK  120
QRKELSRELG LEPLQVKFWF QNKRTQMKTQ HERHENTQLR TENEKLRAEN LRYKEALSNA  180
SCPNCGGPAA LGEMSFDEHH LRIENARLRE EIDRISGIAA KYVGKPMVSY PLLSPPIPSR  240
SGLDLGVGGG FGVQPGIGGE MFGGGELLRS VSGQPEIEKP MVIELAVAAM EELIRMAQLG  300
EPLWTPAGLD NSMETLNEEE YVRTFPRGIG PKPFGLKSEA SRETAVVIMN HINLVEILMD  360
VNQWSTVFSG IVSRAVTLEV LSTGVAGNYN GALQVMELGQ WLMYHLTACA RVRSFDAEEG  420
HQVIWVEHVE VDDRSVHNIY RSLVNSGLAF GAKRWVATLD RQCERLASVM ASNIPSGDIG  480
VITTPEGRKS MLKLAERMVI SFCGGVTAST THQWTTLSGS SAEDVRVMTR KSVDDPGRPP  540
GIVLNAATSF WLPVPPKRVF DFLRDESSRS EVHHHHHHHQ CYCNYYYSLL IDQAPSLIDL  600
FMYIYIYIYL VQWDILSNGG VVQEMAHIAN GRDHGNCVSL LRVNSANSNQ SNMLILQESC  660
TDSTGSYVIY APVDVVAMNV VLNGGDPDYV ALLPSGFAIL PDGPHGVEAG GIGEVGSGGS  720
LLTVAFQILV DSVPTAKLSL GSVATVNSLI ACTVERIKAA VSGETGGQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein