PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01478.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

WRKY

Protein Properties

Length: 624aa MW: 67352.1 Da PI: 6.1656

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01478.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.8	2.9e-30	266	325	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a Cpv+k+v+r+aed +++++tYeg+Hnh+ Dr01478.1 266 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCAEDMSILITTYEGTHNHP 325 58*************************99**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence
MDMVVKRPLE AVVDEGGSKL PKFENGDQTV KSSGSPKHRE ANKVCTAVSS EESTMDTSSR 60 PSSNPKDSTI TTQEDQLDST KVEMGEVREE NERLKMILTR IVKDYQSLQM HFFDIVQQEQ 120 AKKATETPVS ITPEVEDTEL VSLSLGTSST GHKKEEMKPS SSKNKENDHN QVEQVLTLGL 180 QCKFEGSSNG PLSNDQVPLS NLSPDEHNIE EHKKEEEEEE EEAGEPWPPS KILKNNNRNG 240 DDEVSPQTHT KKARVSVRAR CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPACPV 300 RKQVQRCAED MSILITTYEG THNHPLPISA TAMASTTSAA ASMLVSGSST SRSSSIGTPV 360 ITTTTPTTLN STNSHLNSPL NFTLSDNSRP NHFYLPNPSI SSTPSYPTIT LDLTAPPQTS 420 STSHAQQFNR FSSSRYSSTS FNFSSSESSN PITSTWNSSY LNYGSQPHTI SNLVRQPQDS 480 FFQPYLQKPT TTHSFSTATQ PMTTAMITDT IAKAITADPS FQSALAAAIT SYVGGQGSGQ 540 SGGGGGGGDG VKLVENFSSV TPGSTATTST TTTRNGCASS FLTRSSSSSL NPQQGNMMFL 600 QPPLALSSSK SASASPVDNR ENSN

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence

MDMVVKRPLE AVVDEGGSKL PKFENGDQTV KSSGSPKHRE ANKVCTAVSS EESTMDTSSR  60
PSSNPKDSTI TTQEDQLDST KVEMGEVREE NERLKMILTR IVKDYQSLQM HFFDIVQQEQ  120
AKKATETPVS ITPEVEDTEL VSLSLGTSST GHKKEEMKPS SSKNKENDHN QVEQVLTLGL  180
QCKFEGSSNG PLSNDQVPLS NLSPDEHNIE EHKKEEEEEE EEAGEPWPPS KILKNNNRNG  240
DDEVSPQTHT KKARVSVRAR CDAPTMNDGC QWRKYGQKIA KGNPCPRAYY RCTVAPACPV  300
RKQVQRCAED MSILITTYEG THNHPLPISA TAMASTTSAA ASMLVSGSST SRSSSIGTPV  360
ITTTTPTTLN STNSHLNSPL NFTLSDNSRP NHFYLPNPSI SSTPSYPTIT LDLTAPPQTS  420
STSHAQQFNR FSSSRYSSTS FNFSSSESSN PITSTWNSSY LNYGSQPHTI SNLVRQPQDS  480
FFQPYLQKPT TTHSFSTATQ PMTTAMITDT IAKAITADPS FQSALAAAIT SYVGGQGSGQ  540
SGGGGGGGDG VKLVENFSSV TPGSTATTST TTTRNGCASS FLTRSSSSSL NPQQGNMMFL  600
QPPLALSSSK SASASPVDNR ENSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G15130.1	7e-68	WRKY family protein

Link Out ? help Back to Top
Ensembl	Dr01478.1