PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01492.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 256aa MW: 29690.9 Da PI: 4.6018

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01492.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	62.4	6.7e-20	49	102	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q++ Le+ Fe ++++ +++ +LA++lgL+ rqV vWFqNrRa++k Dr01492.1 49 KKRRLSTDQVQFLEKSFEVDNKLEPDRKIQLANELGLQPRQVAVWFQNRRARWK 102 56689************************************************9 PP
2	HD-ZIP_I/II	128	3.9e-41	48	139	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrls++qv++LE+sFe ++kLep+rK +la+eLglqprqvavWFqnrRAR+ktkqlEkd ++Lk++y++lk + ++L ke+++L++e+ Dr01492.1 48 EKKRRLSTDQVQFLEKSFEVDNKLEPDRKIQLANELGLQPRQVAVWFQNRRARWKTKQLEKDLRTLKSSYNSLKLDYDNLLKENQKLNAEVI 139 69**************************************************************************************9885 PP

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence
MFSESRRPIV NFEDVVCANT TEGAMHRSPF ELEETIDEDM DDSLHHPEKK RRLSTDQVQF 60 LEKSFEVDNK LEPDRKIQLA NELGLQPRQV AVWFQNRRAR WKTKQLEKDL RTLKSSYNSL 120 KLDYDNLLKE NQKLNAEVIS LTDKLLLKKI GEKTKPETKA SNQLQNVNFF LASVPSCKQE 180 DLSSTNTVIF DKDSEAGART PLFELTDSSN AFEPENSDLS YVEEDEKVKQ YXCMKLEDSS 240 GNYDYALEDQ GLWLWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	105	RRARWKTKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-47	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr01492.1