PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01607.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 235aa MW: 26194.3 Da PI: 5.6675

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01607.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.7	9.7e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 rg+W++eEd ll++ +++G+g +W t +++ g++R++k+c++rw +yl Dr01607.1 14 RGPWSPEEDILLINFAQKHGTGgNWMTLPQKAGLRRCGKSCRLRWMNYL 62 89*********************************************97 PP
2	Myb_DNA-binding	34.4	5.1e-11	71	111	4	46
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 T+eE ++ + k G++ W+ Ia++++ gRt++++k++w++ Dr01607.1 71 YTEEEGYIISTLYKTIGSK-WSIIASHLP-GRTDNDVKNYWNT 111 6999*************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence
MGKAPCCDKT KVRRGPWSPE EDILLINFAQ KHGTGGNWMT LPQKAGLRRC GKSCRLRWMN 60 YLRPDIKHGG YTEEEGYIIS TLYKTIGSKW SIIASHLPGR TDNDVKNYWN TKLKKKVTTI 120 AEDTEASQTP TPAIDHSIDQ SKTFISELLN DLNEVSSKSS PGQESSNINI PDWFAYENGE 180 MNTLLWELGF ASSSDTSMQE IGDHIGGDSS MASIGSLWSF SETMPQSSAT NELYI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37780.1	5e-66	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr01607.1