PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr01754.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 284aa MW: 32157.1 Da PI: 6.854

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr01754.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	47.3	4.6e-15	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l+d++ + G g+W+ ++ + g+ R +k+c++rw +yl Dr01754.1 15 KGLWSPEEDQRLKDYILRNGHGCWSEVPVKAGLQRNGKSCRLRWINYL 62 678*******************************************97 PP
2	Myb_DNA-binding	57.6	3e-18	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++teE+++ ++++++lG++ W+ Ia++++ gRt++++k++w++yl Dr01754.1 68 RGIFSTEEEKIVINLHALLGNK-WSQIANHLP-GRTDNEVKNHWNSYL 113 7889****************.*****.***********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence
MVCGNCEKPK NHFKKGLWSP EEDQRLKDYI LRNGHGCWSE VPVKAGLQRN GKSCRLRWIN 60 YLRPGLKRGI FSTEEEKIVI NLHALLGNKW SQIANHLPGR TDNEVKNHWN SYLKKRVKNS 120 QEASKSKELD NRNIACNQTI EPLASSSMDS SSSEGTTTTT ITTQSSFIPK VIFADWFSME 180 NVNGENSLIN GDTSSMSCIL DLEQNDTNFL DGFGESECVY GFEAQGQMGS QDGFFDLFYL 240 GDLWRRFRSS LHASFLEMVI ATLFHEKLSK VMLAIENSIX CSIV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52260.1	1e-56	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr01754.1