PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02053.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C3H

Protein Properties

Length: 429aa MW: 45384.8 Da PI: 8.579

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02053.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.8	3.1e-12	21	47	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f+rtGtC yGdrC+++H++ Dr02053.1 21 PGEPDCAYFMRTGTCGYGDRCRYNHPR 47 5789*********************96 PP
2	zf-CCCH	36.6	7.6e-12	69	93	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f+rtGtCk+G++Ck++H++ Dr02053.1 69 EPVCQYFLRTGTCKFGPTCKYHHPR 93 789********************96 PP
3	zf-CCCH	36.4	8.8e-12	114	139	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ rtG+Ck+G++CkF+H++ Dr02053.1 114 GEKECSYYVRTGQCKFGATCKFHHPQ 139 7899********************97 PP
4	zf-CCCH	39.4	1e-12	271	297	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++Ck++H+p Dr02053.1 271 PGQPECQYYMRTGDCKFGSTCKYHHPP 297 5789*********************97 PP
5	zf-CCCH	32.3	1.7e-10	322	345	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C f+a+ G Ck+G++CkF H++ Dr02053.1 322 PTCTFYAQHGVCKFGPTCKFDHPM 345 78********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence
XQLGLGGPGD AAVVVAYPER PGEPDCAYFM RTGTCGYGDR CRYNHPRERV LGAGGLRGGL 60 MDYPERVGEP VCQYFLRTGT CKFGPTCKYH HPRQGSGSAR PVSLNYFGYP LRPGEKECSY 120 YVRTGQCKFG ATCKFHHPQP AGLSVPSPAS SYYPSAQSPS IPSAQPYATM ANWQVARPPS 180 VLPAPYMQGP YGPMLLSPGV VSVPGWSPYP APSSSVVSPG GQQPVQTGSV YGISGQLSPS 240 ASAYPVSYPP LSPPTGPSSS SQKENLYPER PGQPECQYYM RTGDCKFGST CKYHHPPGPG 300 WSIPQTNCTL SPIGFPLRPG APTCTFYAQH GVCKFGPTCK FDHPMGGLSY SPSASSLADI 360 PVAPYPVGSS MATLAPSSSS SELRPDFISN KDSFSTRMPS SETLSSGSIG SIFSKGGSSM 420 AHGEKSSSI

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence

XQLGLGGPGD AAVVVAYPER PGEPDCAYFM RTGTCGYGDR CRYNHPRERV LGAGGLRGGL  60
MDYPERVGEP VCQYFLRTGT CKFGPTCKYH HPRQGSGSAR PVSLNYFGYP LRPGEKECSY  120
YVRTGQCKFG ATCKFHHPQP AGLSVPSPAS SYYPSAQSPS IPSAQPYATM ANWQVARPPS  180
VLPAPYMQGP YGPMLLSPGV VSVPGWSPYP APSSSVVSPG GQQPVQTGSV YGISGQLSPS  240
ASAYPVSYPP LSPPTGPSSS SQKENLYPER PGQPECQYYM RTGDCKFGST CKYHHPPGPG  300
WSIPQTNCTL SPIGFPLRPG APTCTFYAQH GVCKFGPTCK FDHPMGGLSY SPSASSLADI  360
PVAPYPVGSS MATLAPSSSS SELRPDFISN KDSFSTRMPS SETLSSGSIG SIFSKGGSSM  420
AHGEKSSSI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-124	C3H family protein

Link Out ? help Back to Top
Ensembl	Dr02053.1