PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr02192.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 24472 Da    PI: 6.9428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr02192.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.84.3e-261059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               +i+n + rqvtfskRr g++KKA+EL +LCd++v +iifs++gkl+ey+s
  Dr02192.1 10 KIDNATARQVTFSKRRRGLFKKAQELAILCDVDVGLIIFSPSGKLFEYAS 59
               69**********************************************86 PP
2K-box49.51.9e-17961712499
      K-box  24 LkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                Lkke+    r++R++ GedL+ L+l+eL++Le+ ++ +l+++ ++K++ ++eq+++lq+k  +l e+n++L++k+e
  Dr02192.1  96 LKKEYADKMRQLRQMRGEDLQGLTLEELMHLERTIDVGLTRVLQTKEQQIMEQLNRLQQKGMQLLEDNQKLKEKVE 171
                666665555678*************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MAREKIKIRK IDNATARQVT FSKRRRGLFK KAQELAILCD VDVGLIIFSP SGKLFEYASS  60
SMCEILHKHS THAEDPLKPS QQALDFLTGN GPDAGLKKEY ADKMRQLRQM RGEDLQGLTL  120
EELMHLERTI DVGLTRVLQT KEQQIMEQLN RLQQKGMQLL EDNQKLKEKV EGMCMTEKQA  180
LIDHEPVNGS HEDGQCSSDS VPQHCDHTSD TSLKLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-71MIKC_MADS family protein