PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr02193.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26940.7 Da    PI: 5.9277
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr02193.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF77.97.5e-252171151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k+i+n + rqvtfskRr g++KKA+EL +LCd++v +i+fs +gkl +y+s
  Dr02193.1 21 KKIDNATARQVTFSKRRRGLFKKAQELAILCDVDVGLIVFSASGKLSDYAS 71
               68***********************************************86 PP
2K-box50.11.2e-1710618421100
      K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                +a +k+  ++L++  R++ GedL+ L+l+eL +Le+ ++ +l ++ ++K + ++e+++ lq+k  +l eenk+L++k+ee
  Dr02193.1 106 AALMKDYADQLRQL-RQMRGEDLQGLTLEELVHLERTIDIGLARVIERKGQQIMEELNSLQQKGMQLLEENKRLKEKMEE 184
                55677777888776.**************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    
MALNSEREKQ RSMARDKIKI KKIDNATARQ VTFSKRRRGL FKKAQELAIL CDVDVGLIVF  60
SASGKLSDYA SSSMCEILHK HSIQPDNSVK PDEQTLDLLK NNSGYAALMK DYADQLRQLR  120
QMRGEDLQGL TLEELVHLER TIDIGLARVI ERKGQQIMEE LNSLQQKGMQ LLEENKRLKE  180
KMEEMCMVEK QAVIDHDPMN GFHEDVQCSS ESVPEHCDQP SDTSLKLGLP SSDHWE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.16e-68MIKC_MADS family protein