PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02308.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 283aa MW: 31541.3 Da PI: 8.0521

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02308.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.3	3e-17	15	62	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++q+G+g+W++++ g+ R+ k+c++rw +yl Dr02308.1 15 KGPWTPEEDIILVSYIQQHGPGNWRLVPINTGLMRCSKSCRLRWTNYL 62 79********************************************97 PP
2	Myb_DNA-binding	45.3	2.1e-14	68	113	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T E+ ++v++ +lG++ W++Ia++++ Rt++++k++w+++l Dr02308.1 68 RGNFTYTEEAIIVHLQSLLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 113 89******************.*****.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence
MMGRPPCCDK VGIKKGPWTP EEDIILVSYI QQHGPGNWRL VPINTGLMRC SKSCRLRWTN 60 YLRPGIKRGN FTYTEEAIIV HLQSLLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLRRF 120 QASVDCYMNS TSSGSSSTTS HELLSGGYQN PRHHQIPSAY ASSTENISRL LQGWVMKSKI 180 TQEDEVQSII TSDSYKASSS SFAPPVLSNE ELESLIPLGN GSSSSSNNNN INNDNNNNNN 240 NGGCIGAWEK SQCTVDNQNP PLFMLEKWLL DESGVPADAA PLF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	4e-85	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr02308.1