PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02415.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LBD

Protein Properties

Length: 186aa MW: 20631.6 Da PI: 6.2222

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02415.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.2	1.2e-42	34	133	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+lapyfp ++p kf +h++FGasn++kll++lpe++r da++s+vyeA+ar+rdPvyG++gvi +lq++++ l+a+la++++e Dr02415.1 34 PCAACKILRRRCADKCILAPYFPPTDPLKFTTAHRVFGASNIIKLLQELPESQRADAVTSMVYEAKARIRDPVYGCAGVICHLQREVSDLQAQLAKAQAE 133 7***********************************************************************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MDSNETMTTF YNPSSSSSPS PATSPPPPPV IQSPCAACKI LRRRCADKCI LAPYFPPTDP 60 LKFTTAHRVF GASNIIKLLQ ELPESQRADA VTSMVYEAKA RIRDPVYGCA GVICHLQREV 120 SDLQAQLAKA QAEIISMQGH QANLIALVCM EMDKHKQPLI HNSINLDHQS FEDDPYCFLD 180 DISLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-69	LBD family protein

Link Out ? help Back to Top
Ensembl	Dr02415.1