PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02506.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 439aa MW: 47869.1 Da PI: 8.0354

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02506.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.5	1.2e-08	286	333	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Dr02506.1 286 SHSLAERVRREKISKRMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 333 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 439 aa Download sequence
XQQQQQQQQQ HQHLPEFLHV NWTHSGDQSA TNGHFESALS SLVSSPTAPP VAGESVVIRE 60 LIGRLGSICS SGEISPPSSH FTGNHSAANS CYSTPLSSPP KLNLSMMAGN LIPPASLPAF 120 SGDPGFAERA ARYSCFSGKS NYNQFSRVSL SSKSLKAMDS MLEGSQMAGK VSSPPTPMET 180 EFKTAQEVSS ISGESNSRKR KSVMKGKAKV TTTTTSIVNV SKGGEEDENV NVKRWKSAED 240 GKPKAEENNS GEVSGQKQGK DSNAKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISK 300 RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL EFNMENFIAK 360 DTHSLVHPLE XAAAASAFSY SYQPQQGTTL EALTMQMQPQ DGFADIPPQL GNFWEDDLQS 420 VVQSFNNGSL ATSHMKIEL

Sequence ? help Back to Top

Protein Sequence Length: 439 aa Download sequence

XQQQQQQQQQ HQHLPEFLHV NWTHSGDQSA TNGHFESALS SLVSSPTAPP VAGESVVIRE  60
LIGRLGSICS SGEISPPSSH FTGNHSAANS CYSTPLSSPP KLNLSMMAGN LIPPASLPAF  120
SGDPGFAERA ARYSCFSGKS NYNQFSRVSL SSKSLKAMDS MLEGSQMAGK VSSPPTPMET  180
EFKTAQEVSS ISGESNSRKR KSVMKGKAKV TTTTTSIVNV SKGGEEDENV NVKRWKSAED  240
GKPKAEENNS GEVSGQKQGK DSNAKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISK  300
RMKFLQDLVP GCNKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL EFNMENFIAK  360
DTHSLVHPLE XAAAASAFSY SYQPQQGTTL EALTMQMQPQ DGFADIPPQL GNFWEDDLQS  420
VVQSFNNGSL ATSHMKIEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	202	SRKRKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	2e-84	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr02506.1