PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02594.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 282aa MW: 31241.9 Da PI: 7.6748

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02594.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	55	1.8e-17	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l++ v+++G ++W++I++ + gR++k+c++rw + Dr02594.1 16 KGPWSPEEDEELKRQVARHGARNWSLISSSIA-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	53.5	5.4e-17	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T++Ed ++v+a++++G++ W+tIar + gRt++ +k++w++ Dr02594.1 70 PFTPDEDAIIVRAHARFGNR-WATIARLLS-GRTDNAIKNHWNST 112 89****************.*****.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence
MEEAAAGRGK EMERIKGPWS PEEDEELKRQ VARHGARNWS LISSSIAGRS GKSCRLRWCN 60 QLSPDVEHRP FTPDEDAIIV RAHARFGNRW ATIARLLSGR TDNAIKNHWN STLKRILSNS 120 AFAGAGADSV LDRYEEEAGR PAKRMKSGEI PGSPSGSELS DSSNKTXGSE IHRPVLLPEP 180 IVSSPPVDDP ETSLTLSLPG TNRSFPSDKH QTAEIVDDAA FTREFFAMMQ EIIRKEVNEY 240 MQEAKQRGAG EMMMRMSPPP LEQTSPESVK NAAVKRVGVT KM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	1e-68	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr02594.1