PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02666.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

C2H2

Protein Properties

Length: 280aa MW: 30197.8 Da PI: 7.5031

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02666.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12	0.00067	111	133	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+dC+k+F++ L H +H Dr02666.1 111 YECKDCKKCFPSFQALGGHRTSH 133 99*********999998888777 PP
2	zf-C2H2	13.9	0.00016	187	209	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg Fs+ L H+r+H Dr02666.1 187 HECSICGAEFSSGQALGGHMRRH 209 78********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MEEVLHSGGA DESSVAAHIM VKGKRSKRQR LSPSPALXLA SSSPSTSSGS VTEEEEDMVM 60 ANCLILLAQG PELDTAVKDD NNNNNNNNKP SSRKFTETAT TTDGKAGFYV YECKDCKKCF 120 PSFQALGGHR TSHKRKRDAG VAEEDELLKF SINSSSFVAA KPLGLMPSSN NNINNNNNVL 180 SLKMRVHECS ICGAEFSSGQ ALGGHMRRHR PGSVPEVVAE TKKEKSLLSL DLNLPAPSED 240 HRGDGGETAM KEMAKPAFSC ANKRPPPLLL LSSAMVDCHY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04390.1	1e-46	C2H2 family protein

Link Out ? help Back to Top
Ensembl	Dr02666.1