PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02938.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

GRF

Protein Properties

Length: 415aa MW: 46195.3 Da PI: 8.5494

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02938.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	78.6	6e-25	69	113	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCs+++++++k+CErH+hrgr+rsrk++e+ Dr02938.1 69 DPEPGRCRRTDGKKWRCSKDAYPDSKYCERHMHRGRNRSRKPVET 113 79****************************************997 PP
2	QLQ	66.6	5.8e-23	9	44	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+q+L++Q+l++Ky++a++PvP+eLl +i++ Dr02938.1 9 PFTAAQWQELEHQALIFKYMMAGVPVPQELLIPIRR 44 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 415 aa Download sequence
MNTGGWRPPF TAAQWQELEH QALIFKYMMA GVPVPQELLI PIRRSFEALS SRYYQHPALG 60 YCYYGKKLDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM HRGRNRSRKP VETQTISQSQ 120 SSSSTVTSLA PSGSSSSFQS ATPLHAVTGT GNNPQGSFSV GSSGGSSSRL HVDPGSYGMA 180 SKDYRDLAVW KNFSLPAFMV FVWLISYTCL TSFSQFPEVM SSQLWSSVGF LCKNNEKKGS 240 SVVKLYLQGV LKPDVDEHSF FSEASGSARG MGMDSSLDSS WRLMPSQVSS FPLSKTGNSG 300 SLLQSNYPPP LHSLHDLGQT SMSSLSMQHQ HQHQHQQQQQ HSLFGAEFGS SDSVKHESQS 360 LRPFFDEWPK TKDSWSDLED DRSNRTSYST TQLSISIPMA SSDFSTTSSR SPNDD

Sequence ? help Back to Top

Protein Sequence Length: 415 aa Download sequence

MNTGGWRPPF TAAQWQELEH QALIFKYMMA GVPVPQELLI PIRRSFEALS SRYYQHPALG  60
YCYYGKKLDP EPGRCRRTDG KKWRCSKDAY PDSKYCERHM HRGRNRSRKP VETQTISQSQ  120
SSSSTVTSLA PSGSSSSFQS ATPLHAVTGT GNNPQGSFSV GSSGGSSSRL HVDPGSYGMA  180
SKDYRDLAVW KNFSLPAFMV FVWLISYTCL TSFSQFPEVM SSQLWSSVGF LCKNNEKKGS  240
SVVKLYLQGV LKPDVDEHSF FSEASGSARG MGMDSSLDSS WRLMPSQVSS FPLSKTGNSG  300
SLLQSNYPPP LHSLHDLGQT SMSSLSMQHQ HQHQHQQQQQ HSLFGAEFGS SDSVKHESQS  360
LRPFFDEWPK TKDSWSDLED DRSNRTSYST TQLSISIPMA SSDFSTTSSR SPNDD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13960.1	5e-48	GRF family protein

Link Out ? help Back to Top
Ensembl	Dr02938.1