PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02957.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

HD-ZIP

Protein Properties

Length: 186aa MW: 21790.5 Da PI: 8.8118

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02957.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.4	5.1e-18	48	102	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++ +++ +++ +Ak+lgL rqV vWFqNrRa+ k Dr02957.1 48 RKKLRLSKEQACYLEESFKEHATLNPKQKLAIAKRLGLRPRQVEVWFQNRRARTK 102 677889***********************************************98 PP
2	HD-ZIP_I/II	123.7	8.8e-40	48	136	1	90
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk+rlskeq+ LEesF+e+ +L+p++K ++a++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+L++ ++ l+een+rL+ke ++Lr + Dr02957.1 48 RKKLRLSKEQACYLEESFKEHATLNPKQKLAIAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLRQYCEFLTEENQRLQKEIQDLR-S 136 69*************************************************************************************9.4 PP

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence
MANNWEKDFG EDGSHGMKDL DNESAGPSSS QSRWRFGEDD DADRKRTRKK LRLSKEQACY 60 LEESFKEHAT LNPKQKLAIA KRLGLRPRQV EVWFQNRRAR TKLKQTEVDC EYLRQYCEFL 120 TEENQRLQKE IQDLRSLKSP QQQPLQMRAQ AATLTLCPSC EHAASIEKDG FVSQVKFRDN 180 YTRLTC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	43	51	DRKRTRKKL
2	46	52	RTRKKLR
3	47	53	TRKKLRL
4	97	105	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	6e-51	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	Dr02957.1