PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02982.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MYB

Protein Properties

Length: 300aa MW: 34177.8 Da PI: 7.5603

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02982.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.6	4.4e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEd++lv+++ + G ++W+ ++ g++R++k+c++rw +yl Dr02982.1 14 KGPWXPEEDKKLVEYILKNGHDNWRHLPKNAGLNRCGKSCRLRWINYL 61 79********************************************97 PP
2	Myb_DNA-binding	57.7	2.7e-18	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T++E++l+++++ +lG++ W++Iar++ gRt++++k++w+++l Dr02982.1 67 RGKFTEDEEQLIIQLHSLLGNK-WSAIARRLK-GRTDNEIKNYWNTHL 112 89******************.****9.**********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MGRSPCCDDF GIKKGPWXPE EDKKLVEYIL KNGHDNWRHL PKNAGLNRCG KSCRLRWINY 60 LRPDXKRGKF TEDEEQLIIQ LHSLLGNKWS AIARRLKGRT DNEIKNYWNT HLKKKLMLNG 120 IDPMTHRRRS DLDILASIPN LITASANINV SNLNTLRYQL LQSLVQLMSS SSXTPNINFL 180 NSLDSSFIQN HVLMQDLSLP QLSNHYQTCA NPNFHLQTQE IDAXNXTSFG DCSNHALFNS 240 FVXPXNNSSP SLVLPTSPGM FTGDQMREPI NSSYISANSS SDEPSLDDLD IDFSWKNILE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G16770.2	5e-76	MYB family protein

Link Out ? help Back to Top
Ensembl	Dr02982.1