PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02989.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 676aa MW: 73733.5 Da PI: 6.4402

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02989.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	498	543	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L A+ YI++L Dr02989.1 498 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAISYINEL 543 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MNLWTDDNAS MMEAFMASSD LPSFGWPPAT PAPATAPVAS PGPQYFNQET LQQRLQMLID 60 SARERWTYAI FWQSSVDVAS GDSLLGWGDG YYKGCEEDKR KRRMASAASA AEQEHRKRVL 120 RELNSMISGG GSSSPDEAVD EEVTDTEWFF LVSMTQSFVN GGGIPGQAFF AGSAMWIAGA 180 ERLATAPCER ARQAQVFGIQ TMVCVPMGSG VVELGSTALI YHSVEIMNKV RSLFSFNALE 240 MSPAGPFLAP QAAAANVTVM TPVGSPPVTE QGESDPAALW ISDPSIIEMK NSVSAAEISI 300 SKPPTAPYDN PSSSTLTETP SSIYLHSHHQ NSSNNNHHHH HHHHPQSQSL FTRDFNLSSN 360 PHQNCKPESG EILNFTEGRR DPSVHASQHP IIDQTKQKRS TAATSRGSNE EGMLSFSSAT 420 LSRPSPVSSN LKPTTNANGN SKSTANGNGV ITGGGDSDHS DLEASVREVE SSPVVVEPEK 480 RPRKRGRKPA NGREEPLNHV EAERQRREKL NQKFYALRAV VPNVSKMDKA SLLGDAISYI 540 NELRSKLQTI ETEKQALETE IETVKNDPTS ARSSDHEMKS MMNGGGGARC IGVEIEVKIL 600 GSEAMIRVQC IKRNHPAAWL MAALRELDLD VHYASVSVVK ELMILQATVR MLSRAYTQEQ 660 LSAALYSKVA EPPNHR

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MNLWTDDNAS MMEAFMASSD LPSFGWPPAT PAPATAPVAS PGPQYFNQET LQQRLQMLID  60
SARERWTYAI FWQSSVDVAS GDSLLGWGDG YYKGCEEDKR KRRMASAASA AEQEHRKRVL  120
RELNSMISGG GSSSPDEAVD EEVTDTEWFF LVSMTQSFVN GGGIPGQAFF AGSAMWIAGA  180
ERLATAPCER ARQAQVFGIQ TMVCVPMGSG VVELGSTALI YHSVEIMNKV RSLFSFNALE  240
MSPAGPFLAP QAAAANVTVM TPVGSPPVTE QGESDPAALW ISDPSIIEMK NSVSAAEISI  300
SKPPTAPYDN PSSSTLTETP SSIYLHSHHQ NSSNNNHHHH HHHHPQSQSL FTRDFNLSSN  360
PHQNCKPESG EILNFTEGRR DPSVHASQHP IIDQTKQKRS TAATSRGSNE EGMLSFSSAT  420
LSRPSPVSSN LKPTTNANGN SKSTANGNGV ITGGGDSDHS DLEASVREVE SSPVVVEPEK  480
RPRKRGRKPA NGREEPLNHV EAERQRREKL NQKFYALRAV VPNVSKMDKA SLLGDAISYI  540
NELRSKLQTI ETEKQALETE IETVKNDPTS ARSSDHEMKS MMNGGGGARC IGVEIEVKIL  600
GSEAMIRVQC IKRNHPAAWL MAALRELDLD VHYASVSVVK ELMILQATVR MLSRAYTQEQ  660
LSAALYSKVA EPPNHR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	480	488	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-153	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr02989.1