PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr02994.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

bHLH

Protein Properties

Length: 299aa MW: 34047.1 Da PI: 7.4426

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr02994.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.1	7.6e-14	88	139	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P + + ++ + a+i+ A++++k+L+ Dr02994.1 88 QRMTHIAVERNRRRQMNEHLSVLRSLMPDC---YIQRGDQASIVGGAIDFVKELE 139 79**************************...*****************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MSLEALPTSN DFPNFLIYDT ISASPTNFFF PNNNINNINN NNNNNSVLSF SGEFVSTQTS 60 PDIKPGQQRR KRRRKPKSSK NKEEAETQRM THIAVERNRR RQMNEHLSVL RSLMPDCYIQ 120 RGDQASIVGG AIDFVKELEQ LLQSLEAQKR KVLQEQELEE SKNKXELDLP PFSDFFTYPQ 180 XIRFHAPRDY FPSPPSPETH HHHRTPALAD IEVTLIESHA NLRILSPRRP RQLVKLVAGL 240 QALSLTILHL NVTSLDFMVL YSLSTKVEEG CVLTTIEEIA AAVHHLLSLI EAVTPAHSQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	68	74	QRRKRRR
2	69	75	RRKRRRK
3	70	74	RKRRR
4	89	100	RMTHIAVERNRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-63	bHLH family protein

Link Out ? help Back to Top
Ensembl	Dr02994.1