PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr03002.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

LSD

Protein Properties

Length: 208aa MW: 22301.4 Da PI: 8.3247

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr03002.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37.1	5.2e-12	92	115	1	24
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 C+gCr+lL YP GA+sV+Ca+C Dr03002.1 92 CSGCRNLLLYPVGATSVCCAVCSV 115 **********************76 PP
2	zf-LSD1	43	7.6e-14	131	155	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA++V+C++C+tV Dr03002.1 131 CGGCHTLLMYVRGATNVQCSCCHTV 155 ************************9 PP
3	zf-LSD1	41.1	2.9e-13	169	193	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Dr03002.1 169 CGNCRMLLMYQYGARSVKCAVCNFV 193 ***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence
MVVYVAVRKL LGLLHVDGGS SMKEALKMMR MHGARVLETV PLFSFSFFSL LDSSPLKQLL 60 IYLQAMPVPL APYPTPPVPF IQPNGNQSHL VCSGCRNLLL YPVGATSVCC AVCSVITSVP 120 PPGTEMAQLV CGGCHTLLMY VRGATNVQCS CCHTVNLALE ANQVAHVNCG NCRMLLMYQY 180 GARSVKCAVC NFVTSIGAFP STEQKVGA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.1	3e-74	LSD family protein

Link Out ? help Back to Top
Ensembl	Dr03002.1